View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_19 (Length: 210)
Name: NF2379_low_19
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 9687799 - 9687975
Alignment:
| Q |
15 |
aaaatagtgaaatcttatttttgaaggaaaatgagattctcttttnnnnnnnttatttgtttctcctataaaacaaatttgttgcttataaaaacatgcc |
114 |
Q |
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| T |
9687799 |
aaaatagtgaaatcttatttttgaaggaaaatgagattctcttttaaaaaaattatttgtttctcctataaaacaaatttgttgcttataaaaacatgcc |
9687898 |
T |
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| Q |
115 |
acaatgaaatttagctacttacaagtcgcaactatgaagattcaagtttgttcctagcaatgccttcaggaacggcc |
191 |
Q |
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| T |
9687899 |
acaatgaaatttagctacttacaagtcacaactatgaagattcaagcttgttcctagcaatgcgttcaggaacggcc |
9687975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 45227110 - 45227039
Alignment:
| Q |
67 |
ttatttgtttctcctataaaacaaatttgttgcttataaaaacatgccacaatgaaatttagctacttacaa |
138 |
Q |
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| T |
45227110 |
ttatttgtttctcccattaaacaaatttgtattttataaaaacatgccacaaggtaatttagctactcacaa |
45227039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 33615730 - 33615589
Alignment:
| Q |
41 |
gaaaatgagattctcttttnnnnnnnttatttgtttctcctataaaacaaatttgttgcttataaaaacatgccacaatgaaatttagctacttacaagt |
140 |
Q |
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| T |
33615730 |
gaaaatgagattctcttttaaaaatattacttgtttctcccataaaacaacattttaacttataaaaacatgccacaaggtaatttagctac-------t |
33615638 |
T |
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| Q |
141 |
cgcaactatgaagattcaagtttgttcctagcaatgccttcaggaacgg |
189 |
Q |
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| T |
33615637 |
cacaactatgaagcttcaagtccgttcctagcaatgccttccggaacgg |
33615589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 21449006 - 21448883
Alignment:
| Q |
17 |
aatagtgaaatcttatttttga--aggaaaatgagattctcttttnnnnnnnttatttgtttctcctataaaacaaatttgttgcttataaaaacatgcc |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||| || || ||||| |||||||||| |
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| T |
21449006 |
aatagtgaaatcttattttttttgaggaaaatgagattctcttttaaaaagattatttatttctcccataaaacaacatttttacttatgaaaacatgcc |
21448907 |
T |
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| Q |
115 |
acaatgaaatttagctacttacaa |
138 |
Q |
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| T |
21448906 |
acaaggtattttagctactcacaa |
21448883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 19725619 - 19725582
Alignment:
| Q |
11 |
gaataaaatagtgaaatcttatttttgaaggaaaatga |
48 |
Q |
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| T |
19725619 |
gaataaaatagtgaaatattatttttgaaggaaaatga |
19725582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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