View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_3 (Length: 437)
Name: NF2379_low_3
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 36 - 420
Target Start/End: Complemental strand, 54657660 - 54657276
Alignment:
| Q |
36 |
gaagataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
135 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657660 |
gaagataagtgcaagtagttagatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaattgg |
54657561 |
T |
|
| Q |
136 |
tcgtgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagct |
235 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657560 |
tcgtgtcaacattgcatttgatgtggccggcctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagct |
54657461 |
T |
|
| Q |
236 |
ccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657460 |
ccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaactccaa |
54657361 |
T |
|
| Q |
336 |
agaattatggcagcaagagatcggtcttgatcttgctcctgcgataaaaaccaattttatgtgaatgtatctaaacataaattta |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657360 |
agaattatggcagcaagagatcggtcttgatcttgctcctgtgataaaaaccaattttatgtgaatgtatctaaacataaattta |
54657276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 32 - 361
Target Start/End: Complemental strand, 43733718 - 43733389
Alignment:
| Q |
32 |
agatgaagataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaa |
131 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||| |||| |
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| T |
43733718 |
agatgaagataagttcaagtagtcggatttacctaataatagagatcacgttgagtctctaaagcataaatcgtaagcagtaataaagttattattgaaa |
43733619 |
T |
|
| Q |
132 |
ttggtcgtgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgc |
231 |
Q |
| |
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||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
43733618 |
ttgaccgtgtcaacattgcatttgatatggtcgggctgcggcttggtccacgtcaattgatgatcttgggggcttgcatgatacttagctcgttacatgc |
43733519 |
T |
|
| Q |
232 |
agctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaact |
331 |
Q |
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|
||||||||||||| ||||||||||||||| ||||||| | | | | ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43733518 |
agctccattcgtggagcacatcataagcatgagagacattaaagatgggtgaagtgtttgtagcctcccaaagcttggtataacgactcttccacaaact |
43733419 |
T |
|
| Q |
332 |
ccaaagaattatggcagcaagagatcggtc |
361 |
Q |
| |
|
||||||||| |||||||| |||| |||||| |
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|
| T |
43733418 |
ccaaagaatcatggcagccagaggtcggtc |
43733389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 32 - 364
Target Start/End: Original strand, 28570534 - 28570860
Alignment:
| Q |
32 |
agatgaagataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
28570534 |
agatgaagataagtgcaagtagtcag-tttacctaa-aatagagatcatgttgagtctctaaagcataaactgtaagccataatagagttattattgaaa |
28570631 |
T |
|
| Q |
132 |
ttggtcgtgtcaacattgcatttgatgtggccgggctgtggcttggtccacgtccgttgctgatcttgggggcttgccggatgcttagctcgttgcatgc |
231 |
Q |
| |
|
|||| | |||||||||||||||||||||| |||| || |||||||||||| || ||||||||||| ||| |||||| | ||||||||||||||||| |
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|
| T |
28570632 |
ttggatgcgtcaacattgcatttgatgtggtcgggttgcggcttggtccacatcgattgctgatcttaggg-cttgcccg---cttagctcgttgcatgc |
28570727 |
T |
|
| Q |
232 |
agctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagtgtttgtagcctcccaaagcttggtattactactcttccacaaact |
331 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||| ||| || |||||||| |||||||||||||||||||||||| ||||||| | | ||| |
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|
| T |
28570728 |
agctccattcgtgtagcacatcatgagcataagagacaatgaaggtgggtcaagtgtttctagcctcccaaagcttggtattacgactcttctagagact |
28570827 |
T |
|
| Q |
332 |
ccaaagaattatggcagcaagagatcggtcttg |
364 |
Q |
| |
|
||||||||| |||| ||| |||| ||||||||| |
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| T |
28570828 |
ccaaagaatcatggtagccagaggtcggtcttg |
28570860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 29928707 - 29928810
Alignment:
| Q |
32 |
agatgaagataagtgcaagtagtcggatttaattaataatagagatcatgttgagtctctaaagcataaaccataagccataatagagttattatggaaa |
131 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
29928707 |
agataaagataagtgcaagtagtcacatttatcaaataacagagatcatgttgagtctctaaagcataaattgtaagccataataaagttattattgaaa |
29928806 |
T |
|
| Q |
132 |
ttgg |
135 |
Q |
| |
|
|||| |
|
|
| T |
29928807 |
ttgg |
29928810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 349
Target Start/End: Original strand, 29928835 - 29928997
Alignment:
| Q |
187 |
gttgctgatcttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcataagcacaagagacaatgagggtcagtgaagt |
286 |
Q |
| |
|
|||| |||||||||||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||| |||| ||||||||||| ||| ||||||| |
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|
| T |
29928835 |
gttgttgatcttgggggcttgtcagatgtttagcttgttgcatgcaaatccattcatgtaacacatcatgagcatgagagacaatgaaggtgggtgaagt |
29928934 |
T |
|
| Q |
287 |
gtttgtagcctcccaaagcttggtattactactcttccacaaactccaaagaattatggcagc |
349 |
Q |
| |
|
|| |||| | ||||||||| || |||| || |||||| ||||| |||||||| |||||||| |
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|
| T |
29928935 |
gtcactagctttccaaagcttcgtgttacgacacttccataaacttcaaagaatcatggcagc |
29928997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 42703168 - 42703227
Alignment:
| Q |
196 |
cttgggggcttgccggatgcttagctcgttgcatgcagctccattcgtgtagcacatcat |
255 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||| | |||||||||| ||||||||||| |
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|
| T |
42703168 |
cttgggggcacgccggatgtttagctctttgcatgaaactccattcgtatagcacatcat |
42703227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 34763013 - 34763053
Alignment:
| Q |
84 |
gagtctctaaagcataaaccataagccataatagagttatt |
124 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
34763013 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 34763834 - 34763794
Alignment:
| Q |
84 |
gagtctctaaagcataaaccataagccataatagagttatt |
124 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
34763834 |
gagtctctaaagcataaaccatagcccatgatagagttatt |
34763794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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