View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_4 (Length: 420)
Name: NF2379_low_4
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 37961489 - 37961099
Alignment:
| Q |
18 |
ttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961489 |
ttattgtcacccaattcaacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttcc |
37961390 |
T |
|
| Q |
118 |
ataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactcta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37961389 |
ataaccctcctacacttcttccctttttcctctaacctcatcgtccctccaaattcccaaaacaccgatccttacatacgttacctcgatgaagactcta |
37961290 |
T |
|
| Q |
218 |
tctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961289 |
tctccttcaccgtagctgaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctcc |
37961190 |
T |
|
| Q |
318 |
acctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgccta |
408 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961189 |
acctcgtaccgaacaagacaacactcgcatcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgccta |
37961099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 35 - 407
Target Start/End: Original strand, 37906596 - 37906968
Alignment:
| Q |
35 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
134 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37906596 |
aacgtatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
37906695 |
T |
|
| Q |
135 |
cttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagct |
234 |
Q |
| |
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||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
37906696 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatttccttcactgtagct |
37906795 |
T |
|
| Q |
235 |
gaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaag |
334 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37906796 |
gaatcctcagcagacttcaacatcctcgtatctgattcacaagatgctcaaaactggcaccatctcgttccaaatttacctccacctcgtaccgaacaag |
37906895 |
T |
|
| Q |
335 |
acaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtctatttgcct |
407 |
Q |
| |
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|||||| ||| || |||||||||||| |||||| |||||| ||||||||||||||||| || ||||||||||| |
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| T |
37906896 |
acaacattcgtgttatccctataatgtctattccagtcactgttcttccaaactccgggttctctatttgcct |
37906968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 333
Target Start/End: Original strand, 37914759 - 37915057
Alignment:
| Q |
35 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
134 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37914759 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
37914858 |
T |
|
| Q |
135 |
cttccctttttcctctaacctcatcgtccctccaaattcccataacaccgatccttacatacgttacctcgatgaagactctatctccttcaccgtagct |
234 |
Q |
| |
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||| || || |||| ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
37914859 |
ctttcccttcacctccaacctcatcatccctccaaattcccataacactcctcctttcatacgttaccttgatgaagactctatctccttcaccatagct |
37914958 |
T |
|
| Q |
235 |
gaatcctcagcagacttcaatatcctcgtatctgattcacaagatgctcaaaactggcaccatcttgttccaaatttacctccacctcgtaccgaacaa |
333 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
37914959 |
gaatcctcagcagacttcaacatcctcatatctgattcacaagatgctcaaaattggcaccctcttgttccaaatttacctccacctcgtactgaacaa |
37915057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 3782865 - 3782967
Alignment:
| Q |
35 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
134 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
3782865 |
aacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaacactt |
3782964 |
T |
|
| Q |
135 |
ctt |
137 |
Q |
| |
|
||| |
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|
| T |
3782965 |
ctt |
3782967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 3783017 - 3783084
Alignment:
| Q |
187 |
ccttacatacgttacctcgatgaagactctatctccttcaccgtagctgaatcctcagcagacttcaa |
254 |
Q |
| |
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||||| ||||| |||||| ||| ||||||| ||||||||||| | |||||||||| |||| ||||||| |
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| T |
3783017 |
ccttatatacgctacctcaatggagactctctctccttcaccattgctgaatccttagcaaacttcaa |
3783084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 4957855 - 4957761
Alignment:
| Q |
58 |
cctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacacttcttccctttttcctctaa |
152 |
Q |
| |
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|||||| |||| || || ||||||||||| |||| || ||||||||| |||| |||||| | || |||| ||| ||||||||||| |||||||| |
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| T |
4957855 |
cctcattcaacacaacacttccttcaaacttcactaccaattctcaaaaactctctttccctcactctccaacatttcttccctttctcctctaa |
4957761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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