View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_5 (Length: 413)
Name: NF2379_low_5
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 8446707 - 8446320
Alignment:
| Q |
18 |
aatgaatgtttattgtgatcccatttaggttgtgtgatagtgctagctagaacttagaacagacattagagtgtgcttgttttaatgtcatagtttcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8446707 |
aatgaatgtttattgtgatcccatttaggttgtgtgatagtgctagctagaacttagaacagactttagagtgtgcttgttttaatgtcatagtttcaat |
8446608 |
T |
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| Q |
118 |
tctcccacatgttaattttgatgggttaatttgatttcttaaaaataaaaataatgtctattgtgtaattgatcttaccacatgagctagtctttctctt |
217 |
Q |
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|||| ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8446607 |
tctctcacgttttaattttggctggttagtttgatttcttaaaaataaaaataatgtctattgtgtaattgatcttaccacatgagttagtctttctctt |
8446508 |
T |
|
| Q |
218 |
gataataatagtaatttgtagaaggtgactaatatttttacacatttttatcaaaaaattaacaaaattaacacatactttggttccctatgaatttatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446507 |
gataataatagtaatttgtagaaggtgactaatatttttacacatttttatcaaaaaattaacaaaattaacacatactttggttccctatgaatttatt |
8446408 |
T |
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| Q |
318 |
aaaaataaataaatcttttcaattgtacacctttatcaggcttggacaaaagtaatctcaaataactaaaaaccctacgtttcttctc |
405 |
Q |
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| T |
8446407 |
aaaaataaataaatcttttcaattgtacacctttaccaggcttggacaaaagtaatctcaaataactaaaaaccctacgtttcttctc |
8446320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 8455511 - 8455124
Alignment:
| Q |
18 |
aatgaatgtttattgtgatcccatttaggttgtgtgatagtgctagctagaacttagaacagacattagagtgtgcttgttttaatgtcatagtttcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8455511 |
aatgaatgtttattgtgatcccatttaggttgtgtgatagtgctagctagaacttagaacagactttagagtgtgcttgttttaatgtcatagtttcaat |
8455412 |
T |
|
| Q |
118 |
tctcccacatgttaattttgatgggttaatttgatttcttaaaaataaaaataatgtctattgtgtaattgatcttaccacatgagctagtctttctctt |
217 |
Q |
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|||| ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8455411 |
tctctcacgttttaattttggctggttagtttgatttcttaaaaataaaaataatgtctattgtgtaattgatcttaccacatgagttagtctttctctt |
8455312 |
T |
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| Q |
218 |
gataataatagtaatttgtagaaggtgactaatatttttacacatttttatcaaaaaattaacaaaattaacacatactttggttccctatgaatttatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8455311 |
gataataatagtaatttgtagaaggtgactaatatttttacacatttttatcaaaaaattaacaaaattaacacatactttggttccctatgaatttatt |
8455212 |
T |
|
| Q |
318 |
aaaaataaataaatcttttcaattgtacacctttatcaggcttggacaaaagtaatctcaaataactaaaaaccctacgtttcttctc |
405 |
Q |
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| T |
8455211 |
aaaaataaataaatcttttcaattgtacacctttaccaggcttggacaaaagtaatctcaaataactaaaaaccctacgtttcttctc |
8455124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 8441541 - 8441476
Alignment:
| Q |
318 |
aaaaataaataaatcttttcaattgtacacctttatcaggcttggacaaaagtaatctcaaataact |
384 |
Q |
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||||||||| |||||||| |||||||||||||| | || | |||||||||||||||| ||||||||| |
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| T |
8441541 |
aaaaataaa-aaatctttccaattgtacaccttgaccaagtttggacaaaagtaatcccaaataact |
8441476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 8450345 - 8450280
Alignment:
| Q |
318 |
aaaaataaataaatcttttcaattgtacacctttatcaggcttggacaaaagtaatctcaaataact |
384 |
Q |
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||||||||| |||||||| |||||||||||||| | || | |||||||||||||||| ||||||||| |
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| T |
8450345 |
aaaaataaa-aaatctttccaattgtacaccttgaccaagtttggacaaaagtaatcccaaataact |
8450280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 8442184 - 8442132
Alignment:
| Q |
116 |
attctcccacatgttaattttgatgggttaatttgatttcttaaaaataaaaa |
168 |
Q |
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|||||| ||| || |||||||||| |||||||||||||||||||||| ||||| |
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| T |
8442184 |
attctctcacgtgctaattttgataggttaatttgatttcttaaaaaaaaaaa |
8442132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 8450988 - 8450936
Alignment:
| Q |
116 |
attctcccacatgttaattttgatgggttaatttgatttcttaaaaataaaaa |
168 |
Q |
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|||||| ||| || |||||||||| |||||||||||||||||||||| ||||| |
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| T |
8450988 |
attctctcacgtgctaattttgataggttaatttgatttcttaaaaaaaaaaa |
8450936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 14126741 - 14126794
Alignment:
| Q |
116 |
attctcccacatgttaattttgatgggttaatttgatttcttaaaaataaaaat |
169 |
Q |
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|||||| | |||||||||||| ||||||| |||||| |||||||||| |||||| |
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| T |
14126741 |
attctctcccatgttaattttaatgggttcatttgacttcttaaaaaaaaaaat |
14126794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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