View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_6 (Length: 395)
Name: NF2379_low_6
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 38216335 - 38215958
Alignment:
| Q |
1 |
ttcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcctatataaataatt-att |
99 |
Q |
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| T |
38216335 |
ttcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcctata--aataatttatt |
38216238 |
T |
|
| Q |
100 |
caatcacttttgctttttcatcaagcctaaaaaacaatatataccaacttcttcaattacacacaaaatacaatacaacaaaatctcattaacttcatac |
199 |
Q |
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| T |
38216237 |
caatcacttttgctttttcatcaagcctaaaaaacaatatataccaacttcttcaattacaca--aaatacaatacaacaaaatctcattaactttatac |
38216140 |
T |
|
| Q |
200 |
tatagtaagagaaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaagagtcaagagtttaaaaaatgctggtggtgctgctg |
299 |
Q |
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| T |
38216139 |
tatagtaagagaaatatcaatatgtctgacattgctatgttagtagctgaggagtatgagagaagagtcaagagtttaaaaaatgctggtggtgctgctg |
38216040 |
T |
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| Q |
300 |
ctgtagaaacatgggagattaacatgtcttcttgttattcactattcgtttccaagttgaaggaggagaaaaagcaacttgt |
381 |
Q |
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| T |
38216039 |
ctgtagaaacatgggagatcaacatgtcttcttgttattcactattcgtttccaagttgaaggaggagaaaaggcaacttgt |
38215958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 23608722 - 23608590
Alignment:
| Q |
1 |
ttcacaaaacagacaaaccaaacccactttcacaattgcacttaatctcatccttatccacaacccttcccaatgtcctttcctatataaataattattc |
100 |
Q |
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||||||||| ||||||||||||||||||| |||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||| | ||||| |
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| T |
23608722 |
ttcacaaaatagacaaaccaaacccacttacacaattggattcaatctcatccttatccaaaacccttcccaatgtcctttcc--aataaatgaatattc |
23608625 |
T |
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| Q |
101 |
aatcacttttgctttttcatcaagcctaaaaaaca |
135 |
Q |
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||||||| |||||||||||||||||| |||||||| |
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| T |
23608624 |
aatcactattgctttttcatcaagccaaaaaaaca |
23608590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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