View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2379_low_8 (Length: 339)
Name: NF2379_low_8
Description: NF2379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2379_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 40 - 324
Target Start/End: Original strand, 9941505 - 9941789
Alignment:
| Q |
40 |
ataaaatcaaatttaattacatataatatgaatcattaaacttgattgaaaacacaatggaacacacacatataatgaaaacgcaataaaaataaaatgc |
139 |
Q |
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| T |
9941505 |
ataaaatcaaatttaattacatataatatgaatcattaaacttgattgaaaacacaatggaatacacacatataatgaaaacgcaataaaaataaaatgc |
9941604 |
T |
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| Q |
140 |
aaggctcctccttgtttgggagagaatggtgatagtgagctttttcattttgctctgtatagttttcggtatttatagtcataaattaggtttaaggtca |
239 |
Q |
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| T |
9941605 |
aaggctcctccttgtttgggagagaatggtgatagtgagctttttcattttgctctgtatagttttcggtatttatagtcataaattaggtttaaggtca |
9941704 |
T |
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| Q |
240 |
ttactagctgaagaagatgacaaaaatgcaaggcttgagtctgcaggctagtgcagagggtacatgtttggaccaccaaaaaccg |
324 |
Q |
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| T |
9941705 |
ttactagctgaagaagatgacaaaaatgcaaggcttgagtctgcaggctagtgcagagggtacatgtttggaccaccaaaaaccg |
9941789 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 13646322 - 13646234
Alignment:
| Q |
209 |
tatttatagtcataaattaggtttaaggtcattactagctgaagaagatgacaaaaatgcaaggcttgagtctgcaggctagtgcagagg |
298 |
Q |
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|||||||||||| |||||||||||||||| | ||| ||||||||||| | |||||| ||||||||| | |||||||| | ||||||| |
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| T |
13646322 |
tatttatagtcacgcattaggtttaaggtcaatgttagttgaagaagatggc-aaaatgtaaggcttgaatttgcaggctggggcagagg |
13646234 |
T |
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