View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2380_high_1 (Length: 346)
Name: NF2380_high_1
Description: NF2380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2380_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 37488804 - 37488534
Alignment:
| Q |
1 |
gtgatatagacatataaataaaataccaaaataagttcagtagaagaatgtctttcagttacaatgacagcatatcaattgtatctaaaacagnnnnnnn |
100 |
Q |
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| T |
37488804 |
gtgatatagacatataaataaaataccaaaataagttcagtagaagaatgtctttcagttacaatgacagcatatcaattgtatctaaaaca--aaaaaa |
37488707 |
T |
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| Q |
101 |
nnnntcagtgttgtatttccaaaaggctaactctagtgaagtcagcaggaaaaaccacaatttccaaatgaagtgcagcaagaagcagtgtgttagaaaa |
200 |
Q |
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| T |
37488706 |
aaaatcagtgttgtatttccaaaaggctaactctagtgaagtcagcaggaaaaaccacaatttccaaatgaagtgcagcaaaaagcagtgtgttagaaaa |
37488607 |
T |
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| Q |
201 |
tgataatacaactgatccacaatttccaaatgatgtttttatcaacatactctactctaatatcttatctttg |
273 |
Q |
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| T |
37488606 |
tgataatacaactgatccacaatttccaaatgatgtttttataaacatactctactctaatatcttatctttg |
37488534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 37488403 - 37488332
Alignment:
| Q |
259 |
aatatcttatctttggatttaggcttggaaacttctatttgacataattgtaaaatggctgaagcttattat |
330 |
Q |
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| T |
37488403 |
aatatcttatctttggatttaggcttggaaacttctatttgacataattgtaaaatggctgaagcttattat |
37488332 |
T |
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