View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2380_high_3 (Length: 261)
Name: NF2380_high_3
Description: NF2380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2380_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33050591 - 33050341
Alignment:
| Q |
1 |
tagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaagatgggatcattgtggaaaaggtggttaaggataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33050591 |
tagagcacttattattatgttcacattgaaagagtggaagtccggtaaacttgcaaagagtaaagatgggatcattgtggaaaaggcggttaaggataac |
33050492 |
T |
|
| Q |
101 |
gtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050491 |
gtgttttggaaaaatgttatgaattgcatgaggggtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgc |
33050392 |
T |
|
| Q |
201 |
aactctgtctcttcttttctctttgacaagcttaactgtgtggtctctgtg |
251 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050391 |
aactctgtttcttcttttctctttgacaagcttaactgtgtggtctctgtg |
33050341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42807364 - 42807121
Alignment:
| Q |
1 |
tagagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaagatgggatcattgtggaaaaggtggttaaggataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42807364 |
tagagcacttattattatgttcacattgaaagagtggaagtccggtaaacttgcaaagagtaaagatgggatcattgtggaaaaggcggttaaggataac |
42807265 |
T |
|
| Q |
101 |
gtgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807264 |
gtgttttggaaaaatgttatgaattgcatgaggggtgttttcctccttacgtgcgtggtagcctccctgtgacggcttccccttgactcctcttccttgc |
42807165 |
T |
|
| Q |
201 |
aactctgtctcttcttttctctttgacaagcttaactgtgtggt |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42807164 |
aactctgtttcttcttttctctttgacaagcttaactgtgtggt |
42807121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 42765004 - 42764859
Alignment:
| Q |
2 |
agagcacttattattatgttcacattgaaagagtggaagtccggtaaactagcaaagagtaaagatgggatcattgtggaaaaggtggttaaggataacg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42765004 |
agagcacttattattatgttcacattgaaagaatggaagtccggtaaacttgcaaagagtaaagatgggatcattgtggaaaaggcggttaaggataac- |
42764906 |
T |
|
| Q |
102 |
tgttttggaaaaatgttatgaattgcatgagtggtgttttcctccttac |
150 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
42764905 |
--ttttggaaaaatgttatgatttgcatgaggggtgttttcccccttac |
42764859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 42764453 - 42764367
Alignment:
| Q |
162 |
cctccctgtgacggcttccccttgactcctcttccttgcaactctgtctcttcttttctctttgacaagcttaactgtgtggtctctgtg |
251 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42764453 |
cctccctgtgacggcttccccctgactcctcttccttgcaactctgt---ttcttttctctttgacaagcttaactgtgtggtctctgtg |
42764367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University