View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2380_low_2 (Length: 343)
Name: NF2380_low_2
Description: NF2380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2380_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 33051025 - 33050709
Alignment:
| Q |
17 |
actatgctgaactttttggtgaatactctcgagcgagccatttttaagaaatctattgacgcgtctaacataagcaaaaactgccgacaatgtttttaag |
116 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
33051025 |
actatactgaactttttggtgaatactctcaagcgagccatttttaagaaatctattgatgcgtctatcataagcaaaaactgccgacaatgtttttaag |
33050926 |
T |
|
| Q |
117 |
atgatattgttgtaaaggttgttgaagaacttgtcccaatttttatggacaatgcagcaaattacaaagttgatgggtaattgttgatgcaaaagtggga |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050925 |
atgatattgttgttaaggttgttgaagaacttgtcccaatttttatggacaatgcagcaaattacaaagttgatgggtaattgttgatgcaaaagtggga |
33050826 |
T |
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| Q |
217 |
gaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050825 |
gaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaaa |
33050726 |
T |
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| Q |
317 |
aatatcacaatattcat |
333 |
Q |
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||||||||||||||||| |
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| T |
33050725 |
aatatcacaatattcat |
33050709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 42807788 - 42807489
Alignment:
| Q |
17 |
actatgctgaactttttggtgaatactctcgagcgagccatttttaagaaatctattgacgcgtctaacataagcaaaaactgccgacaatgtttttaag |
116 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42807788 |
actatactgaactttttggtgaatactctcaagcgagccatttttaagaaatctattgacgcgtctaacataagcaaaaactgccgacaatgtttttaag |
42807689 |
T |
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| Q |
117 |
atgatattgttgtaaaggttgttgaagaacttgtcccaatttttatggacaatgcagcaaattacaaagttgatgggtaattgttgatgcaaaagtggga |
216 |
Q |
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| T |
42807688 |
atgatattgttgtaaaggttgttgaagaacttgtcccaatttttatggacaatgcagcaaattacaaagttgatgggtaattgttgatgcaaaagtggga |
42807589 |
T |
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| Q |
217 |
gaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaaa |
316 |
Q |
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| T |
42807588 |
gaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccacaagatatgattgctagcgataaaa |
42807489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 42765427 - 42765108
Alignment:
| Q |
17 |
actatgctgaactttttggtgaatactctcgagcgagccatttttaagaaatctattgacgcgtctaacataagcaaaaactgccgacaatgtttttaag |
116 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42765427 |
actatactgaactttttggtgaatactctcaagcgagccatttttaggaaatctattgacgcatctaacataagcaaaaactgccgacaatgtttttaag |
42765328 |
T |
|
| Q |
117 |
atgatattgttgtaaaggttgttgaagaacttgtcccaatttttatggacaatgcagcaaat--tacaaagttgatgggtaattgttgatgcaaaagtgg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
42765327 |
atgatattgttgtaaaggttgttgaagaacttgtcccaatttttatggacaatgcagaaaattatacaaagttgatgggtaattgttgatgcaaaagtgg |
42765228 |
T |
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| Q |
215 |
gagaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaagatttctttccac-aagatatgattgctagcgata |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
42765227 |
gagaagttgtattggacaccatgtgcagctcattgaatcgacctaatgttgaaattttttgagaagatttctttccacaaagatatgatttatagtgata |
42765128 |
T |
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| Q |
314 |
aaaaatatcacaatattcat |
333 |
Q |
| |
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||||||||||||| |||||| |
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| T |
42765127 |
aaaaatatcacaacattcat |
42765108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 15658821 - 15658881
Alignment:
| Q |
221 |
ttgtattggacaccatgtgcagctcattgaatcgacctaatgttggaaaattttgagaaga |
281 |
Q |
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|||||||||||||||||||| |||||||| || ||| | |||||||| |||||||||||| |
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| T |
15658821 |
ttgtattggacaccatgtgctgctcattgtattgacttgatgttggaggattttgagaaga |
15658881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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