View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2381_high_2 (Length: 421)
Name: NF2381_high_2
Description: NF2381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2381_high_2 |
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| [»] scaffold0062 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 6327 - 5929
Alignment:
| Q |
11 |
agatgaaagattgcataataaatttcttatttgattacaacttcaatttcaatttgaaaagtnnnnnnnttgttgtttttcaatgaaaatattatgcatt |
110 |
Q |
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| T |
6327 |
agatgaaagattgcataataaatttcttatttgattacaacttcaatttcaatttgaaaagtaaaaaaattgttgtttttcaatgaaaatattatgcatt |
6228 |
T |
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| Q |
111 |
ttattattaactattattacaagcacatgatatattgataaaagagaag----------------caatataatacaaaagcacacacaaaattacaagt |
194 |
Q |
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| T |
6227 |
ttattattaactattattacaagcacatgatatattgataaaagagaagtaattctccacactcacaatataatacaaaagcacacacaaaattacaagt |
6128 |
T |
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| Q |
195 |
acaaaatgatatagctggctagaaactcatcaattcttagttatgtgacgaggaggaggttttgcaagatttcctccaggaagaaagctttggtctcacc |
294 |
Q |
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| T |
6127 |
acaaaatgatatagctggctataaactcatcaattcatagttatgtgacgaggaggaggctttgcaagatgtcctcaaggaggaaaggtttggtctcacc |
6028 |
T |
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| Q |
295 |
agagggaggaaccacagagtcatgagcgttccatagaaaaataccagggagtgtggagaattgcataagatgtttgcagccagcaatgaagatctccct |
393 |
Q |
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| T |
6027 |
agagggaggaaccacagagtcatgagcattccaaagaaaaataccagggagtgtggagtattgcataagatgtttgcatccagcaatgaagatctccct |
5929 |
T |
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