View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2381_low_12 (Length: 268)
Name: NF2381_low_12
Description: NF2381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2381_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 48713953 - 48714165
Alignment:
| Q |
33 |
acaagcagcattcaatttgtgagaagcaaatttctttggctggattttacccacatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
132 |
Q |
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| T |
48713953 |
acaagcagcattcaatttgttagaagcaaatttctttggctggattttacccgcatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
48714052 |
T |
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| Q |
133 |
tacgagtgttgagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactcc |
232 |
Q |
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| T |
48714053 |
tgtgagtgttaagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactct |
48714152 |
T |
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| Q |
233 |
ttctgtggtgctg |
245 |
Q |
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| T |
48714153 |
ttcagtggtgctg |
48714165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 48695754 - 48695888
Alignment:
| Q |
106 |
tacatctaatctagttataaatagaaatacgagtgttgagtattttggagggaagtaaaatta--------aaaggtcaaacaaacaaaaatgttaggtc |
197 |
Q |
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| T |
48695754 |
tacatctagtctagttataaatagaaatgggagtgttgagtatt--ggagggaagtgcagttagcaaaacaaaaagtcaaagaaacaaaaatgtcaggtc |
48695851 |
T |
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| Q |
198 |
cggcatgctgctcaaacccaccaattctgaactcctt |
234 |
Q |
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| T |
48695852 |
atgcatgctgctctaacccaccaattctgaacccctt |
48695888 |
T |
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