View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2381_low_1_N (Length: 648)
Name: NF2381_low_1_N
Description: NF2381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2381_low_1_N |
 | |
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| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
| [»] scaffold0455 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 68 - 636
Target Start/End: Complemental strand, 28131040 - 28130472
Alignment:
| Q |
68 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaagtacataggcagaagttcacagtaacaagaaactgataaatatc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28131040 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaaatacataggcagaagttcacagtaacaagaaactgataaatatc |
28130941 |
T |
|
| Q |
168 |
ttgatacaccagcaacatcatatgaagttcctcaatagcacaatacatcaaatgtagcatctgttaaataccttacatttgcttcacaactttaacggac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130940 |
ttgatacaccagcaacatcatatgaagttcctcaatagcacaatacatcaaatgtagcatctgtcaaataccttacatttgcttcacaactttaacggac |
28130841 |
T |
|
| Q |
268 |
gcaagcaagcattcccactaatgcctttctcataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130840 |
gcaagcaagcattcccactaatgcctttcgcataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaa |
28130741 |
T |
|
| Q |
368 |
ttcctttattggaccataaacttttgatgtgcattcagatatagtaaaattcataaagaaggttgctacagatattctaggacctatattccttgacaac |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28130740 |
ttcctttattggaccataaacttttgatgtgcattcagatatagtaaaattcataaagaaggttgctacagatattctaggacctatattccttgacaac |
28130641 |
T |
|
| Q |
468 |
acccggtgattaacactgatgaacgtgtcattcgtcattagctgcacaaataacaaggaagtcaacgaatatatggatcataaaattgtattcatggaag |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
28130640 |
acccggtgattaacactgatgaacgtgtcattcgtcattagctgcacaaataacaaggaagtcaacgaatatatggatcataaaattgtgttaatggaag |
28130541 |
T |
|
| Q |
568 |
ttccgaatctttaagttctgctttagattatgttcttaatgattcgtttggaagtaacatcttaagaat |
636 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130540 |
ttccgaatctttaagttctactttagattatgttcttaatgattcgtttggaagtaacatcttaagaat |
28130472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 68 - 636
Target Start/End: Complemental strand, 41242659 - 41242091
Alignment:
| Q |
68 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaagtacataggcagaagttcacagtaacaagaaactgataaatatc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242659 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaaatacataggcagaagttcacagtaacaagaaactgataaatatc |
41242560 |
T |
|
| Q |
168 |
ttgatacaccagcaacatcatatgaagttcctcaatagcacaatacatcaaatgtagcatctgttaaataccttacatttgcttcacaactttaacggac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242559 |
ttgatacaccagcaacatcatatgaagttcctcaatagcacaatacatcaaatgtagcatctgtcaaataccttacatttgcttcacaactttaacggac |
41242460 |
T |
|
| Q |
268 |
gcaagcaagcattcccactaatgcctttctcataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaa |
367 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41242459 |
gcaagcaagcattcccactaatgcctttcgcataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaa |
41242360 |
T |
|
| Q |
368 |
ttcctttattggaccataaacttttgatgtgcattcagatatagtaaaattcataaagaaggttgctacagatattctaggacctatattccttgacaac |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242359 |
ttcctttattggaccataaacttttgatgtgcattcagatatagtaaaattcataaagaaggttgctacagatattctaggacctatattccttgacaac |
41242260 |
T |
|
| Q |
468 |
acccggtgattaacactgatgaacgtgtcattcgtcattagctgcacaaataacaaggaagtcaacgaatatatggatcataaaattgtattcatggaag |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41242259 |
acccggtgattaacactgatgaacgtgtcattcgtcattagctgcacaaataacaaggaagtcaacgaatatatggatcataaaattgtgttaatggaag |
41242160 |
T |
|
| Q |
568 |
ttccgaatctttaagttctgctttagattatgttcttaatgattcgtttggaagtaacatcttaagaat |
636 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41242159 |
ttccgaatctttaagttctactttagattatgttcttaatgattcgtttggaagtaacatcttaagaat |
41242091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 49463177 - 49463273
Alignment:
| Q |
298 |
cataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaattcctttattggaccataaacttttga |
394 |
Q |
| |
|
||||||||| || ||||| |||| || ||||| ||| | |||||||| |||||||||||||| | || |||||| || ||||||||||| ||||| |
|
|
| T |
49463177 |
cataataatgtgccaagaaatcttctatggtaatgtctttgtagattggtgggttttcttctgaaagcagttccttaataggaccataaacctttga |
49463273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 219 - 422
Target Start/End: Complemental strand, 1695 - 1487
Alignment:
| Q |
219 |
atgtagcatctgttaaataccttacatttgcttcacaactttaacggacgcaagcaagcattcccactaatgcctttctcataataatttgtcaagattt |
318 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| || |||||||||| | | ||||| || |||| || || |||||| ||||||||||| ||||||||| |
|
|
| T |
1695 |
atgtagcatttgtcaaataccttatatttgttttacaactttaaagaaagcaagtaataattcacatcaaggccttttgcataataatttatcaagattt |
1596 |
T |
|
| Q |
319 |
ctttcatagtaatatctctat-----agattggagggttttcttctgataacaattcctttattggaccataaacttttgatgtgcattcagatatagta |
413 |
Q |
| |
|
|||||||||||| || | || ||||||||||||| | ||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||| |
|
|
| T |
1595 |
ctttcatagtaacattcccattagatagattggagggttgttaattgataacaaatcctttattagatcataaacctttgatttgcattcagatatagta |
1496 |
T |
|
| Q |
414 |
aaattcata |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
1495 |
aaattcata |
1487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 219 - 422
Target Start/End: Complemental strand, 22183 - 21975
Alignment:
| Q |
219 |
atgtagcatctgttaaataccttacatttgcttcacaactttaacggacgcaagcaagcattcccactaatgcctttctcataataatttgtcaagattt |
318 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| || |||||||||| | | ||||| || |||| || || |||||| ||||||||||| ||||||||| |
|
|
| T |
22183 |
atgtagcatttgtcaaataccttatatttgttttacaactttaaagaaagcaagtaataattcacatcaaggccttttgcataataatttatcaagattt |
22084 |
T |
|
| Q |
319 |
ctttcatagtaatatctctat-----agattggagggttttcttctgataacaattcctttattggaccataaacttttgatgtgcattcagatatagta |
413 |
Q |
| |
|
|||||||||||| || | || ||||||||||||| | ||||||||| ||||||||| || ||||||| |||||| ||||||||||||||||| |
|
|
| T |
22083 |
ctttcatagtaacattcccattagatagattggagggttgttaattgataacaaatcctttattagatcataaacctttgatttgcattcagatatagta |
21984 |
T |
|
| Q |
414 |
aaattcata |
422 |
Q |
| |
|
||||||||| |
|
|
| T |
21983 |
aaattcata |
21975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 8945 - 8885
Alignment:
| Q |
68 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaagtaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8945 |
aattttatgcttcttttaaagttggtacatatgcatatgctaacaatcagctcaaaataca |
8885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 219 - 422
Target Start/End: Original strand, 41409272 - 41409484
Alignment:
| Q |
219 |
atgtagcatctgttaaataccttacatttgcttcacaactttaacggacgcaagcaagcattcccactaatgcctttctcataataatttgtcaagattt |
318 |
Q |
| |
|
||||||||| ||| |||||||||| ||||| || |||||||||| | | ||||| || |||| || || |||||| ||||||||||| ||||||||| |
|
|
| T |
41409272 |
atgtagcatttgtcaaataccttatatttgttttacaactttaaagaaagcaagtaataattcacatcaaggccttttgcataataatttatcaagattt |
41409371 |
T |
|
| Q |
319 |
ctttcatagtaatat-----ctctatagattggagggttttcttctgataacaattcctttat----tggaccataaacttttgatgtgcattcagatat |
409 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| ||||||||| | |||||| | || ||||||| |||||||||||||||||||| |
|
|
| T |
41409372 |
ctttcatagtaacattcccattagatagattggagggtttttaattgataacaaattctttattagatagatcataaacctttgatgtgcattcagatat |
41409471 |
T |
|
| Q |
410 |
agtaaaattcata |
422 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
41409472 |
agtaatattcata |
41409484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 33768119 - 33768185
Alignment:
| Q |
317 |
ttctttcatagtaatatctctatagattggagggttttcttctgataacaattcctttattggacca |
383 |
Q |
| |
|
|||||||| |||| |||| |||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
33768119 |
ttctttcacagtagtatccctatagattgccggattttcttctgataacaattcctttattggacca |
33768185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 33761508 - 33761587
Alignment:
| Q |
301 |
aataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaattcctttattgga |
380 |
Q |
| |
|
|||||| || ||||| |||||||| |||| | || ||||||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
33761508 |
aataatgtgccaagacttctttcaaagtagtgtccctatagattggtggattttcttctgatagcaattcctttattgga |
33761587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 383
Target Start/End: Original strand, 33770906 - 33770992
Alignment:
| Q |
297 |
tcataataatttgtcaagatttctttcatagtaatatctctatagattggagggttttcttctgataacaattcctttattggacca |
383 |
Q |
| |
|
|||||||||| || ||||| || |||| |||| | || ||||||||||| || |||||||||||||||||||| |||||||||||| |
|
|
| T |
33770906 |
tcataataatgtgccaagaaatcattcacagtagtgtccctatagattggtggattttcttctgataacaattcatttattggacca |
33770992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 26173184 - 26173128
Alignment:
| Q |
331 |
tatctctatagattggagggttttcttctgataacaattcctttattggaccataaa |
387 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| || || |||||||||| |
|
|
| T |
26173184 |
tatctctatagattggtgggttctcttctgataacaattctttaataggaccataaa |
26173128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 25221259 - 25221318
Alignment:
| Q |
328 |
taatatctctatagattggagggttttcttctgataacaattcctttattggaccataaa |
387 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| | |||||| || || |||||||||| |
|
|
| T |
25221259 |
taatatctctatagattggtgggttctcttctgagaccaattctttaataggaccataaa |
25221318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 394
Target Start/End: Complemental strand, 26397731 - 26397670
Alignment:
| Q |
333 |
tctctatagattggagggttttcttctgataacaattcctttattggaccataaacttttga |
394 |
Q |
| |
|
||||| ||||| || ||| |||||||||||||||||| |||||| ||||| ||||| ||||| |
|
|
| T |
26397731 |
tctctgtagatcggtgggatttcttctgataacaatttctttataggaccgtaaacctttga |
26397670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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