View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2381_low_7 (Length: 304)
Name: NF2381_low_7
Description: NF2381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2381_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 47688121 - 47687854
Alignment:
| Q |
28 |
catttagaacataaatagttaagtgatcaaaattcattttccattgcttagctgacattttagtttctattcataaagataatatatagttataagcaat |
127 |
Q |
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| T |
47688121 |
catttagaacataaatagttaagtgatcaaaattcattttccattgcttagctgacattttagtttctattcataaagataatatatagttataagcaat |
47688022 |
T |
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| Q |
128 |
caaaactcctttttagtctaattgacattttatttcttatctataaagatcatggatagttaagaaatcaaaattcattctttatcgccttatatattga |
227 |
Q |
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| T |
47688021 |
caaaactcctttttagtctaattgacattttatttcttatctataaagatcatggatagttaagaaatcaaaattcattctttatggccttatatattga |
47687922 |
T |
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| Q |
228 |
cattttagattctaaaagaatggatggttnnnnnnncccaaagcatttccgacatttcatattctttt |
295 |
Q |
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| T |
47687921 |
cattttagattctaaaagaatggatggttaaaaaaacccaaagcatttccgacatttcatattctttt |
47687854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 36346887 - 36346927
Alignment:
| Q |
170 |
ataaagatcatggatagttaagaaatcaaaattcattcttt |
210 |
Q |
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| T |
36346887 |
ataaagataatgaatagttaagcaatcaaaattcattcttt |
36346927 |
T |
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