View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2382_high_1 (Length: 739)

Name: NF2382_high_1
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2382_high_1
NF2382_high_1
[»] chr2 (5 HSPs)
chr2 (10-470)||(5877823-5878279)
chr2 (491-725)||(5877329-5877572)
chr2 (254-328)||(5864938-5865012)
chr2 (264-345)||(5858200-5858281)
chr2 (131-169)||(5932987-5933025)
[»] scaffold0171 (1 HSPs)
scaffold0171 (123-169)||(9897-9943)
[»] chr4 (3 HSPs)
chr4 (124-168)||(54537851-54537895)
chr4 (131-169)||(29597704-29597742)
chr4 (139-169)||(51205656-51205686)
[»] chr8 (1 HSPs)
chr8 (131-169)||(1417438-1417476)
[»] chr3 (1 HSPs)
chr3 (136-169)||(34430448-34430481)
[»] chr1 (1 HSPs)
chr1 (124-161)||(43844212-43844249)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 470
Target Start/End: Complemental strand, 5878279 - 5877823
Alignment:
Q  10 aatattattataaatatttttaaacatatacatgattaaaaagtatttgatgaaatatagataaaataaaagtgaacactcatgtaccctttaagttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |    
T  5878279 aatattattataaatatttttaaacatatacatgattaaaaagtatttgatgaaatatagataaaataaaagtgaacactcatgtaccctttaaggatgt 5878180  T
Q  110 aattgatgtgtataatcattaaattattcaatgtcatgttatatttttatattaatttatcttnnnnnnnnttcaaattttaagcctaaaaagtaccggt 209  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  5878179 aaa--------ataatcattaaattattcaatgtcatgttatatttttatattaatttatcttaaaataaattcaaattttaagcctaaaaagtaccggt 5878088  T
Q  210 agccaaccaatctccaagataaattatagaaaaaattatggatttata----agccccacctttgtccaagaagctggcctcaagatcagattaggaacg 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  5878087 agccaaccaatctccaagataaattatagaaaaaattgtggatttatatataacccccacctttgtccaagaagctggcctcaagatcagattaggaacg 5877988  T
Q  306 cttccattgtaatactcctttttaaacataattggacctgcaatatctcaagtttcaattgttttctctatgaatattgtggacctcaaatgtagttctt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5877987 cttccattgtaatactcctttttaaacataattggacctgcaatatctcaagtttcaattgttttctccatgaatattgtggacctcaaatgtagttctt 5877888  T
Q  406 aaatattgatcagaagtgtattgaccctcaattattcaatgagtatcctttattcacacttattc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5877887 aaatattgatcagaagtgtattgaccctcaattattcaatgagtatcctttattcacacttattc 5877823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 491 - 725
Target Start/End: Complemental strand, 5877572 - 5877329
Alignment:
Q  491 tttagttttaaattcaatttctccattttctgaatataataatattgcgattgagagatcaaaattgaatgattttaaaatagacatactaattttgtga 590  Q
    ||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5877572 tttagttttaaattcaatttcaccattttctgaatataata---ttgcgattgagagatcaaaattaaatgattttaaaatagacatactaattttgtga 5877476  T
Q  591 attagtaaagataggacg------------attaaactaatataaaataattacatgacattaaattacaatgtcttttcgaaaaaggtgaattatatct 678  Q
    ||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5877475 attagtaaagataggacggccaaaactataattaaactaatataaaataattacatgacattaaattacaatgtcttttcgaaaaaggtgaattatatct 5877376  T
Q  679 agatcttcaccaatcatgaaggagataggctatgatgcgtggaaaat 725  Q
    |||||||||||||||||||||||||||||||||| || |||||||||    
T  5877375 agatcttcaccaatcatgaaggagataggctatgctgtgtggaaaat 5877329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 328
Target Start/End: Complemental strand, 5865012 - 5864938
Alignment:
Q  254 tataagccccacctttgtccaagaagctggcctcaagatcagattaggaacgcttccattgtaatactccttttt 328  Q
    ||||| ||||||||||||||| |||  | ||||||||||||||||||| | ||| |||||||| | |||||||||    
T  5865012 tataacccccacctttgtccatgaatgttgcctcaagatcagattaggcaggctcccattgtattcctccttttt 5864938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 5858281 - 5858200
Alignment:
Q  264 acctttgtccaagaagctggcctcaagatcagattaggaacgcttccattgtaatactcctttttaaacataattggacctg 345  Q
    ||||||||||| |||  |||| |||||||||||||||| | ||| |||||||| | |||||||||||||  || ||||||||    
T  5858281 acctttgtccaggaatgtggcttcaagatcagattaggcaggctcccattgtattcctcctttttaaactcaagtggacctg 5858200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 5932987 - 5933025
Alignment:
Q  131 aattattcaatgtcatgttatatttttatattaatttat 169  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  5932987 aattatttaatgtcatgttatatttttattttaatttat 5933025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 9897 - 9943
Alignment:
Q  123 aatcattaaattattcaatgtcatgttatatttttatattaatttat 169  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  9897 aatcatcaaattattcaacgtcatgtcatatttttatattaatttat 9943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 54537851 - 54537895
Alignment:
Q  124 atcattaaattattcaatgtcatgttatatttttatattaattta 168  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||    
T  54537851 atcattcaatcattcaatatcatgttatatttttatattaattta 54537895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 29597704 - 29597742
Alignment:
Q  131 aattattcaatgtcatgttatatttttatattaatttat 169  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  29597704 aattattcaatgacatgtcatatttttatattaatttat 29597742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 51205656 - 51205686
Alignment:
Q  139 aatgtcatgttatatttttatattaatttat 169  Q
    |||||||||||||||||||||||||||||||    
T  51205656 aatgtcatgttatatttttatattaatttat 51205686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 1417438 - 1417476
Alignment:
Q  131 aattattcaatgtcatgttatatttttatattaatttat 169  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  1417438 aattattaaatgacatgttatatttttatattaatttat 1417476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 34430448 - 34430481
Alignment:
Q  136 ttcaatgtcatgttatatttttatattaatttat 169  Q
    ||||||||||||| ||||||||||||||||||||    
T  34430448 ttcaatgtcatgtcatatttttatattaatttat 34430481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 161
Target Start/End: Complemental strand, 43844249 - 43844212
Alignment:
Q  124 atcattaaattattcaatgtcatgttatatttttatat 161  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  43844249 atcatttaattattcaatgtcatgtcatatttttatat 43844212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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