View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_high_2 (Length: 415)
Name: NF2382_high_2
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 5665381 - 5665643
Alignment:
| Q |
22 |
gttttagtcatggatggcgtgaaagaagaccatgttgatcaggtctgttgacggtgttgagccaactataattgaagatgaggtt--------------- |
106 |
Q |
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| T |
5665381 |
gttttactcatggatggcgtgaaagaagaccatgttga---ggtctgttgacggtgttgagccaaccacaattgaagatgaggttgcgcaaggatcatct |
5665477 |
T |
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| Q |
107 |
aacaaacctaccaaattgaagtccgttaaagtgcagaagatttaaccagatttatgtcatacatgatgctgtgttttgtcaacgtagctttgaaatgttt |
206 |
Q |
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| T |
5665478 |
aacaaacctaccaaattgaagtccgttaaagtgcagaagatttaaccagatttatgtcatacatgatgttgtgctttgtcgacgtagctttgaaatgttt |
5665577 |
T |
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| Q |
207 |
ttattcctgactgtgtgcccttgatatatatgtaatgcctgttgcagtaattttgaacttttttcc |
272 |
Q |
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| T |
5665578 |
ttattcctgaccgtgtgcccttgatatatatgtaatgcctgttgcagtaattttgaacttttttcc |
5665643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 156 - 391
Target Start/End: Original strand, 1000808 - 1001032
Alignment:
| Q |
156 |
atttatgtcatacatgatgctgtgttttgtcaacgtagctttgaaatgtttttattcctgactgtgtgcccttgatatatatgtaatgcctgttgcagta |
255 |
Q |
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| T |
1000808 |
atttatgacatacatgatgttgtgtgttgcc---gtagttttgaaatgtttttatttctgaccgtgtgcccttgatat----gtaatgcacgtcgccgta |
1000900 |
T |
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| Q |
256 |
attttgaacttttttccctgnnnnnnngggtgttgtactgtaatatgtattgtggatatatattcagcttttcttcacttggtgctatcatgtttaattg |
355 |
Q |
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| T |
1000901 |
attttgaacttttttccttttttttttggg-gtggta---tattatgtcatgtggatggatatttagcttttcttcatttggtgctatcatgtttaattg |
1000996 |
T |
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| Q |
356 |
ttttgcaattttaattaaatcagttggtattcagtt |
391 |
Q |
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| T |
1000997 |
ttttgcaattttaattaaatcagatggtgttcagtt |
1001032 |
T |
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