View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_high_4 (Length: 324)
Name: NF2382_high_4
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 31241936 - 31241612
Alignment:
| Q |
1 |
gtcatacttatatctaccatttcaaatattgattgaaatatgtacctattgtttaaaaacaatacttaatatgcatataaaatcatcgttttaacataac |
100 |
Q |
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| T |
31241936 |
gtcatacttatatctaccatttcaaatattgattgaaatatgtacctattgtttaaaaacaatacttaatatgcatataaaatcatcgttttaacataac |
31241837 |
T |
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| Q |
101 |
tcaatta--atatgaacattgtgatgtgatatacaagggttaaaaaataacaggttaaaagcaatacacaagcnnnnnnnnnnnnnnnngtaacttacaa |
198 |
Q |
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| T |
31241836 |
tcaattaatatatgaacattgtgatgtgatatacaagggttaaaaaataacaggttaaaagcaatacacaagcaagaaagaaaaaaaaagttacttacaa |
31241737 |
T |
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| Q |
199 |
aatattactttcatataatttattattatcataatttatcattctaatacaaaattacctacatttcttttgaggagcaaattacatatattttttaata |
298 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||| |||||| |
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| T |
31241736 |
aatattac-atcatatcatttattattatcataatttatcattctaatacaaaattaactacatttcttttgagaagaaaattaaatatatttcttaata |
31241638 |
T |
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| Q |
299 |
tgtatgaaaacgtcaaaatagcctat |
324 |
Q |
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||||||||||||||||||| |||||| |
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| T |
31241637 |
tgtatgaaaacgtcaaaatcgcctat |
31241612 |
T |
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