View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2382_high_6 (Length: 250)
Name: NF2382_high_6
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_high_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 26002257 - 26002408
Alignment:
| Q |
99 |
ctatcttatgtttaatgctttaaataatcattatttgaagataaaaacttcatcatggtgattctttacaaatttcaatgggtgattattacttgggttg |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26002257 |
ctatcttaagtttaatgctttaaataatcattatttgaagataaaaacttcatcatggtgattctttacaaatttcaatgtgtgattattacttgggttg |
26002356 |
T |
|
| Q |
199 |
cacggtattgttcatcacttagggttctatattgattgattaaacaaataaa |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26002357 |
cacggtattgttcatcacttagggtcctatattgattgattaaacaaataaa |
26002408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University