View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2382_low_1 (Length: 923)

Name: NF2382_low_1
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2382_low_1
NF2382_low_1
[»] chr3 (2 HSPs)
chr3 (767-907)||(3361854-3361994)
chr3 (510-568)||(104762-104818)
[»] chr6 (1 HSPs)
chr6 (632-684)||(17509907-17509959)
[»] chr7 (1 HSPs)
chr7 (616-680)||(32541047-32541111)
[»] chr2 (2 HSPs)
chr2 (613-693)||(13173633-13173713)
chr2 (636-693)||(39576435-39576492)
[»] chr4 (2 HSPs)
chr4 (478-564)||(7061290-7061374)
chr4 (634-691)||(19914490-19914547)
[»] chr8 (1 HSPs)
chr8 (480-564)||(42804745-42804827)
[»] chr5 (1 HSPs)
chr5 (616-685)||(10329079-10329148)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 767 - 907
Target Start/End: Original strand, 3361854 - 3361994
Alignment:
Q  767 ggctagttttgcctccaactcgttggcttgttgaacatagttgtgaaccattagtttaaaattgttagcaagttattgagagacttgatacttgttctca 866  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3361854 ggctagttttgcctccaactcgttggcttgttgaacatagttgtgaatcattagtttaaaattgttagcaagttattgagagacttgatacatgttctca 3361953  T
Q  867 agcatctccaagttaatttgatttcttatcaaatatgttgt 907  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  3361954 agcatctccaagttaatttgatttcttattgaatatgttgt 3361994  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 568
Target Start/End: Original strand, 104762 - 104818
Alignment:
Q  510 taaggatagttttgtccatgtgtaataaagatattaattgcacatcttccctcccctcc 568  Q
    |||||||| ||||||| ||||  ||||| |||||||||||||||||||||||| |||||    
T  104762 taaggataattttgtcaatgt--aataatgatattaattgcacatcttccctctcctcc 104818  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 684
Target Start/End: Original strand, 17509907 - 17509959
Alignment:
Q  632 tttcctccccttttaaaaattgaacaaaatatatcaagttaaaaatattccct 684  Q
    ||||||||| ||||||||||||||||||| || |||| |||||||||||||||    
T  17509907 tttcctccctttttaaaaattgaacaaaacatgtcaaattaaaaatattccct 17509959  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 616 - 680
Target Start/End: Complemental strand, 32541111 - 32541047
Alignment:
Q  616 ttttgctcccctcacctttcctccccttttaaaaattgaacaaaatatatcaagttaaaaatatt 680  Q
    |||||||||||||  || || |||||||||||||||||||| ||| || |||| |||||||||||    
T  32541111 ttttgctcccctcctctctcatccccttttaaaaattgaaccaaacatgtcaaattaaaaatatt 32541047  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 693
Target Start/End: Original strand, 13173633 - 13173713
Alignment:
Q  613 gggttttgctcccctcacctttcctccccttttaaaaattgaacaaaatatatcaagttaaaaatattccctctcctcccc 693  Q
    |||||||||||||||  |||  ||||||||| |||||||||||| ||| || |||| ||||||||||| |||  |||||||    
T  13173633 gggttttgctccccttccctcccctccccttctaaaaattgaaccaaacatgtcaaattaaaaatatttccttccctcccc 13173713  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 693
Target Start/End: Complemental strand, 39576492 - 39576435
Alignment:
Q  636 ctccccttttaaaaattgaacaaaatatatcaagttaaaaatattccctctcctcccc 693  Q
    |||||||| |||||||||||| ||| ||||||| ||||||||||| | || |||||||    
T  39576492 ctccccttctaaaaattgaaccaaacatatcaaattaaaaatattacttcccctcccc 39576435  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 564
Target Start/End: Complemental strand, 7061374 - 7061290
Alignment:
Q  478 agtaagaatagttttgagttttaacataaaactaaggatagttttgtccatgtgtaataaagatattaattgcacatcttccctccc 564  Q
    |||||||||| |||| ||||| ||||| ||  ||||||||||||| || ||||  ||||| || |||||||||||| ||||||||||    
T  7061374 agtaagaataattttaagtttcaacattaatttaaggatagttttctcaatgt--aataatgacattaattgcacaccttccctccc 7061290  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 691
Target Start/End: Complemental strand, 19914547 - 19914490
Alignment:
Q  634 tcctccccttttaaaaattgaacaaaatatatcaagttaaaaatattccctctcctcc 691  Q
    ||||||||||||||||||||||| ||| |  |||| |||||||| ||||||| |||||    
T  19914547 tcctccccttttaaaaattgaaccaaacacttcaaattaaaaatcttccctcccctcc 19914490  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 564
Target Start/End: Complemental strand, 42804827 - 42804745
Alignment:
Q  480 taagaatagttttgagttttaacataaaactaaggatagttttgtccatgtgtaataaagatattaattgcacatcttccctccc 564  Q
    ||||||||||||  ||||||||||||||  |||||| ||||||||| |  |||||| | || || ||||| ||||||||||||||    
T  42804827 taagaatagtttgaagttttaacataaatttaaggacagttttgtcaa--tgtaatcatgacataaattgaacatcttccctccc 42804745  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 685
Target Start/End: Complemental strand, 10329148 - 10329079
Alignment:
Q  616 ttttgctcccctcacctttcctccccttttaaaaattgaacaaaatatatcaagttaaaaatattccctc 685  Q
    ||||||||||||  || | ||||||||| |||||||||||| ||||| | ||| || |||||||||||||    
T  10329148 ttttgctccccttcccctccctccccttctaaaaattgaaccaaatacaacaaatttaaaatattccctc 10329079  T

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