View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2382_low_10 (Length: 309)

Name: NF2382_low_10
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2382_low_10
NF2382_low_10
[»] chr5 (1 HSPs)
chr5 (1-302)||(27371630-27371931)
[»] chr1 (9 HSPs)
chr1 (32-299)||(47764470-47764737)
chr1 (32-299)||(47772860-47773127)
chr1 (48-184)||(47713365-47713501)
chr1 (48-184)||(47745948-47746084)
chr1 (123-240)||(47756030-47756147)
chr1 (48-184)||(47718159-47718295)
chr1 (48-184)||(47760280-47760416)
chr1 (51-155)||(6507109-6507213)
chr1 (45-155)||(6500280-6500390)
[»] scaffold0341 (2 HSPs)
scaffold0341 (51-155)||(1134-1238)
scaffold0341 (51-155)||(8788-8892)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 27371931 - 27371630
Alignment:
Q  1 taattgtatcccaagccaaagccttatttgaatgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27371931 taattgtatcccaagccaaagccatatttgaatgtgataataacagaggaaactacacagtcaatagcacctacgacaacaaccttaaaacccttctata 27371832  T
Q  101 cagtttctcttcccacacagaaattaactacggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27371831 cagtttctcttcccacacagaaattaactacggtttttacaatttctcatatggccaacacccagacaaaataaaggccattgggttgtgtcgcggagat 27371732  T
Q  201 cttgagccaaatcagtgtcgtagaaacctaaacaattccattgcctatcttagagcaaagtgcccaaatcaaaaagaggccattttgtggggtgatgatg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27371731 cttgagccaaatcagtgtcgtagaaacctaaacaattccattgcctatcttagagcaaagtgtccaaatcaaaaagaggccattttgtggggtgatgatg 27371632  T
Q  301 tc 302  Q
    ||    
T  27371631 tc 27371630  T

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Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 47764470 - 47764737
Alignment:
Q  32 atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactac 131  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||||| |||||||| | |||| | || ||     
T  47764470 atgtgataacaacagaggcaattacacagccaatagcacctacgacaacaaccttaaaacccttttttccagtttttcttcccataaagaagtcaattat 47764569  T
Q  132 ggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaa 231  Q
    ||||| ||||||||||||||||||||| |||| ||||||  | |  ||||||||||||| ||||||||||||||||| |||||||||| |  ||| ||||    
T  47764570 ggtttctacaatttctcatatggccaagaccccgacaaagcatacaccattgggttgtgccgcggagatcttgagccgaatcagtgtcttgcaaagctaa 47764669  T
Q  232 acaattccattgcctatcttagagcaaagtgcccaaatcaaaaagaggccattttgtggggtgatgat 299  Q
    ||||| ||||| ||| |||||||| | | || ||||||||||||||||| ||| ||||||||| ||||    
T  47764670 acaataccattccctttcttagagaacaatgtccaaatcaaaaagaggcgattgtgtggggtggtgat 47764737  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 47772860 - 47773127
Alignment:
Q  32 atgtgataataacagaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactac 131  Q
    ||||||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||| ||| | | |||| | ||||| || |||||||| ||||||    
T  47772860 atgtgataacaacataggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactac 47772959  T
Q  132 ggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgtagaaacctaa 231  Q
    ||||| |||||||||||||||||| || | ||  |||||  | | | ||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  47772960 ggtttctacaatttctcatatggcgaagaaccaaacaaagcatatgtcataggggtgtgtcgcggagatattgagccaaatcagtgtcgtacaaacctaa 47773059  T
Q  232 acaattccattgcctatcttagagcaaagtgcccaaatcaaaaagaggccattttgtggggtgatgat 299  Q
    ||||||||||||  ||||| ||||   |||| ||||| ||||||||||| ||| ||||||||| ||||    
T  47773060 acaattccattggttatctcagagagcagtgtccaaaccaaaaagaggcaattgtgtggggtggtgat 47773127  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 47713501 - 47713365
Alignment:
Q  48 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 147  Q
    ||||||||||||| ||||||||||||  | |||||||| || |||||| ||| || | || ||||| ||||  |||| ||||||||||| ||||||||||    
T  47713501 ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct 47713402  T
Q  148 catatggccaacaccctgacaaaataaaggccattgg 184  Q
    | ||||||||| || | |||||| |||| ||||||||    
T  47713401 cttatggccaaaacaccgacaaagtaaacgccattgg 47713365  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 47746084 - 47745948
Alignment:
Q  48 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 147  Q
    ||||||||||||| ||||||||||||  | |||||||| || |||||| ||| || | || ||||| ||||  |||| ||||||||||| ||||||||||    
T  47746084 ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct 47745985  T
Q  148 catatggccaacaccctgacaaaataaaggccattgg 184  Q
    | ||||||||| || |||| ||| |||| ||||||||    
T  47745984 cttatggccaaaacactgataaagtaaacgccattgg 47745948  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 47756030 - 47756147
Alignment:
Q  123 attaactacggtttttacaatttctcatatggccaacaccctgacaaaataaaggccattgggttgtgtcgcggagatcttgagccaaatcagtgtcgta 222  Q
    |||||||| | ||| || |||||||||||||||||| |||| ||||||  | |||||| ||||||| ||| || |||||||||||||||| ||||| |||    
T  47756030 attaactatgatttctaaaatttctcatatggccaagacccagacaaagcataggccactgggttgcgtcacgtagatcttgagccaaataagtgttgta 47756129  T
Q  223 gaaacctaaacaattcca 240  Q
     ||||||| |||| ||||    
T  47756130 taaacctagacaagtcca 47756147  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 47718295 - 47718159
Alignment:
Q  48 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 147  Q
    ||||||||||||| ||||||||||||  | |||||||| |  |||||| | | || | |  ||||| |||||||||| ||||||||||| ||||||||||    
T  47718295 ggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttct 47718196  T
Q  148 catatggccaacaccctgacaaaataaaggccattgg 184  Q
    | ||||||||| || |||||||| |||| ||| ||||    
T  47718195 cttatggccaaaacactgacaaagtaaacgccgttgg 47718159  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 47760416 - 47760280
Alignment:
Q  48 ggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttct 147  Q
    ||||||||||||| ||||||||||||  | |||||||| || ||| || | | || | |  ||||| || ||||||| ||||||||||| |||||| | |    
T  47760416 ggcaactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatattt 47760317  T
Q  148 catatggccaacaccctgacaaaataaaggccattgg 184  Q
    | ||||||||| || |||||||| |||| ||||||||    
T  47760316 cttatggccaaaacactgacaaagtaaacgccattgg 47760280  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 6507213 - 6507109
Alignment:
Q  51 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 150  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  6507213 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 6507114  T
Q  151 atggc 155  Q
    |||||    
T  6507113 atggc 6507109  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 6500390 - 6500280
Alignment:
Q  45 agaggcaactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatt 144  Q
    ||||| |||||||||   ||||||||||| ||||| ||||| || || ||| |||  | | || ||||| |||||||||| ||||||||||| |||||||    
T  6500390 agaggtaactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatt 6500291  T
Q  145 tctcatatggc 155  Q
    | ||| |||||    
T  6500290 tttcacatggc 6500280  T

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Target: scaffold0341 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 1238 - 1134
Alignment:
Q  51 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 150  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  1238 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 1139  T
Q  151 atggc 155  Q
    |||||    
T  1138 atggc 1134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 8892 - 8788
Alignment:
Q  51 aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat 150  Q
    |||||||||  ||| ||||||||| |||  ||||| ||||||||||||| || | || ||||| ||| ||| |||||||||||||| || |||| ||| |    
T  8892 aactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctctt 8793  T
Q  151 atggc 155  Q
    |||||    
T  8792 atggc 8788  T

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