View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_low_15 (Length: 238)
Name: NF2382_low_15
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31241571 - 31241349
Alignment:
| Q |
1 |
ttgagatttgtgtggatgctgaaacaaatgtgaatccgtatgtcatttatccttannnnnnncattgcttatttattttccttaataatgttttattcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
31241571 |
ttgagatttgtgtggatgctgaaacaaatgtgaacccatatgtcatttatccttatttttttcattgcttatttattttccttaataatattttattcta |
31241472 |
T |
|
| Q |
101 |
tcaacaattctggtcaccctagctttcaacaagactatcaaggtcctctcgaagattagaaataaatttcttaactagataaatttgattaagaacatgc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31241471 |
tcaacaattctggtcaccctagctttcaacaggactatcaaggtcctctcgaagattagaaataaatttcttaactagataagtttgattaagaacatgc |
31241372 |
T |
|
| Q |
201 |
acctacttgtaacccatcttatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
31241371 |
acctacttgtaacccatcttatt |
31241349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 39689347 - 39689449
Alignment:
| Q |
111 |
tggtcaccctagctttcaacaagactatcaaggtcctctcgaagattagaaataaatttcttaactagataaatttgattaagaacatgcacctacttgt |
210 |
Q |
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||||||| ||||||||||||||| ||| | ||||| |||| ||||||| || | || ||||||| |||||||| ||||||||||||| ||| |||| |
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| T |
39689347 |
tggtcacgctagctttcaacaaggctaccctggtcccctcgcagattaggaacagatggcttaactgtttaaatttgtttaagaacatgcatctaattgt |
39689446 |
T |
|
| Q |
211 |
aac |
213 |
Q |
| |
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||| |
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| T |
39689447 |
aac |
39689449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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