View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_low_16 (Length: 236)
Name: NF2382_low_16
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 1703463 - 1703680
Alignment:
| Q |
5 |
ttccataaaacaaaagcaaagtactcaactacaaaataaggaaaatgattatgcacccttaaatcaaacctacacaatgttctctgaaggtggcttgtct |
104 |
Q |
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| T |
1703463 |
ttccattaaacaaaagcaaagcactcaactacaaaataaggaaaatgattatgcacccttaaatcaaacctacacaatgttctctgaagttggcttgtct |
1703562 |
T |
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| Q |
105 |
gttgttaattctgaagttggcttgtctgctgttgtctctgaagttggtttgtatgctgatcttagaaagttatatgcaagtgctccagctatggctccaa |
204 |
Q |
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| T |
1703563 |
gttgttaattctgaagttggcttgtctgctattgtctctgaagttggtttgtatgctgatcttagaaagttataggcaagtgctccagctatggctccaa |
1703662 |
T |
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| Q |
205 |
taattggaccaactatat |
222 |
Q |
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| T |
1703663 |
taattggaccaactatat |
1703680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Complemental strand, 34020006 - 34019951
Alignment:
| Q |
162 |
gatcttagaaagttatatgcaagtgctccagctatggctccaataattggaccaac |
217 |
Q |
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| T |
34020006 |
gatctaagaaagttatatgcaattgctccagctatagctccaacaattggaccaac |
34019951 |
T |
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