View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2382_low_3 (Length: 551)

Name: NF2382_low_3
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2382_low_3
NF2382_low_3
[»] chr2 (1 HSPs)
chr2 (7-535)||(9722485-9723013)
[»] chr8 (2 HSPs)
chr8 (165-396)||(38281566-38281797)
chr8 (167-387)||(39304489-39304709)
[»] chr4 (2 HSPs)
chr4 (168-397)||(56067885-56068114)
chr4 (257-315)||(56098849-56098907)
[»] chr3 (1 HSPs)
chr3 (161-401)||(23569680-23569920)
[»] chr5 (1 HSPs)
chr5 (164-381)||(41866542-41866759)
[»] chr7 (2 HSPs)
chr7 (149-255)||(22139957-22140063)
chr7 (149-255)||(40539347-40539453)
[»] chr1 (1 HSPs)
chr1 (134-338)||(39786251-39786455)


Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 7 - 535
Target Start/End: Complemental strand, 9723013 - 9722485
Alignment:
Q  7 catcatcatcatcatagaagatggaactccaactccatgaccataaactccaccactatcctcaccaacattcccatctctttgatcactcctaccaatc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  9723013 catcatcatcatcatagaagatggaactccaactccatgaccataaactccaccactaccctcaccaacattcccatctctctgatcactcctaccaatc 9722914  T
Q  107 atagcactcttttcaccttccatctctctatacttactcaaataaatcttgagtggctcaacataatcttcaaatccaagagttgtcatagcccaaagaa 206  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9722913 atagcactcttctctccttccatctccctatacttactcaaataaatcttgagtggctcaacataatcttcaaatccaagagttgtcatagcccaaagaa 9722814  T
Q  207 gatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccagttatgaaactgataaactctgatacacactcttgtactgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9722813 gatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccagttatgaaactgataaactctgatacacactcttgtactgt 9722714  T
Q  307 ttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctactcacgtttgctattggaagaaacctgtcttgctctctgcaa 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9722713 ttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctactcacgtttgctattggaagaaacctatcttgctctctgcaa 9722614  T
Q  407 cctgtttgaccacctcctgactcattgtctgattcagccatagttgcaaacctatctatgaaatgctaccaaccatatatggtcttattatatgtgtgta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9722613 cctgtttgaccacctcctgactcattgtctgattcagccatagttgcaaacctatctttgaaatgctaccaaccatatatggtcttattatatgtgtgta 9722514  T
Q  507 tgcatttatatattcattcatatgctaac 535  Q
    |||||||||||||||||||||||||||||    
T  9722513 tgcatttatatattcattcatatgctaac 9722485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 165 - 396
Target Start/End: Complemental strand, 38281797 - 38281566
Alignment:
Q  165 caacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctcc 264  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||||||||||||||||||| ||    
T  38281797 caacatagttttcaaaaccaagtgttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcacc 38281698  T
Q  265 agttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatccta 364  Q
    ||| |||||||| || ||||| || ||||| ||||| || ||||||||||||||||||||||| || || |||||||| |  ||  ||||||| || |      
T  38281697 agtaatgaaactaatgaactcagagacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaagtgctcttttcattatacgg 38281598  T
Q  365 ctcacgtttgctattggaagaaacctgtcttg 396  Q
    |||||||| || ||||| || |||||||||||    
T  38281597 ctcacgttagcaattggtaggaacctgtcttg 38281566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 167 - 387
Target Start/End: Complemental strand, 39304709 - 39304489
Alignment:
Q  167 acataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccag 266  Q
    ||||| |||||||| || |  ||||| |||||||||| || |||||||||||||||||| || || || ||| | ||||| ||||| || ||||| || |    
T  39304709 acatattcttcaaagcctaacgttgtaatagcccaaataatatcatcaccgttgattgtctttcttttttctctttgacatttatccgatgcttccccgg 39304610  T
Q  267 ttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctact 366  Q
    | |  ||||| || ||||| || ||||| ||||| ||||| |||||||| || |||||||| ||| | ||||| || | | | |||||||| || ||||     
T  39304609 tgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctacc 39304510  T
Q  367 cacgtttgctattggaagaaa 387  Q
     || |||||||| ||||||||    
T  39304509 aacatttgctataggaagaaa 39304489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 168 - 397
Target Start/End: Complemental strand, 56068114 - 56067885
Alignment:
Q  168 cataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctccagt 267  Q
    |||| |||||||| ||||| || ||||| ||||| | ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||| || ||    
T  56068114 catattcttcaaagccaagtgtagtcatggcccacacaagatcatcaccgtttattgtcttcctcttctctttctgacacttttcagatgcttcacctgt 56068015  T
Q  268 tatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcctactc 367  Q
    |||||| || || |||||||||||||||||||| |  |||||||| |||||||| || ||||||||  | |  ||||| || || ||||||||||||| |    
T  56068014 tatgaagcttatgaactctgatacacactcttgcatcgtttctttagcttctttcgatatctttgctctcgtcggtaacgctttcttcatgatcctaccc 56067915  T
Q  368 acgtttgctattggaagaaacctgtcttgc 397  Q
    ||||||||||| ||||||| ||| ||||||    
T  56067914 acgtttgctatgggaagaagcctttcttgc 56067885  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 56098907 - 56098849
Alignment:
Q  257 gcttctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgc 315  Q
    ||||||||||||||||| |||||  |||| || ||||||||||| | ||||||||||||    
T  56098907 gcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgc 56098849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 161 - 401
Target Start/End: Complemental strand, 23569920 - 23569680
Alignment:
Q  161 ggctcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagctt 260  Q
    ||||||||||| || || ||||| |  || ||||| |||||||| | |||||| |||||||| || |||| ||||||    ||||||||||| || ||||    
T  23569920 ggctcaacatactcctcgaatcccaacgtcgtcatcgcccaaagcaaatcatcgccgttgatcgtcttccgcttctcacgttgacacttatcggaggctt 23569821  T
Q  261 ctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgat 360  Q
    | || || ||||| ||||| |||||||| ||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||  || |||||||||||    
T  23569820 cgccggtgatgaagctgatgaactctgaaacacactcttgaactgtttcctttgcgtcttttgagatcttcgcgttcgctggtagtgcttttttcatgat 23569721  T
Q  361 cctactcacgtttgctattggaagaaacctgtcttgctctc 401  Q
    ||| || |||||||||||||||||||| | |||||| ||||    
T  23569720 cctgcttacgtttgctattggaagaaatcggtcttgttctc 23569680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 164 - 381
Target Start/End: Complemental strand, 41866759 - 41866542
Alignment:
Q  164 tcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacacttatcagaagcttctc 263  Q
    ||||| || ||||||||||| |  || ||||| |||||||| ||||| || |||||||| || || |  |||||| ||||||||||||| |||||||| |    
T  41866759 tcaacgtactcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcac 41866660  T
Q  264 cagttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgcgtttgctggtaaagcctttttcatgatcct 363  Q
    | || ||||| ||||| ||||| |||||||| || || || ||||| || || ||||| |||||||| |||||||||||||| ||||| ||||| || ||    
T  41866659 cggtgatgaagctgatgaactccgatacacattcctgcaccgtttccttagcatctttcgagatcttcgcgtttgctggtaacgccttcttcattattct 41866560  T
Q  364 actcacgtttgctattgg 381  Q
     |||||||||||||||||    
T  41866559 gctcacgtttgctattgg 41866542  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 22140063 - 22139957
Alignment:
Q  149 taaatcttgagtggctcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacact 248  Q
    |||||||| || || |||| |||||| ||||| || | ||| | ||| |||||||| | |||||||||||| || || |||||||||||| |||||||||    
T  22140063 taaatcttaagaggatcaatataatcctcaaaccctaaagtagccatcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacact 22139964  T
Q  249 tatcaga 255  Q
    |||||||    
T  22139963 tatcaga 22139957  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 40539453 - 40539347
Alignment:
Q  149 taaatcttgagtggctcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctcttctctttctgacact 248  Q
    |||||||| || || |||| |||||| ||||| || | ||| | ||| |||||||| | |||||||||||| || || |||||||||||| |||||||||    
T  40539453 taaatcttaagaggatcaatataatcctcaaaccctaaagtagccatcgcccaaagcaaatcatcaccgttaatcgtcttcctcttctctctctgacact 40539354  T
Q  249 tatcaga 255  Q
    |||||||    
T  40539353 tatcaga 40539347  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 338
Target Start/End: Original strand, 39786251 - 39786455
Alignment:
Q  134 ctatacttactcaaataaatcttgagtggctcaacataatcttcaaatccaagagttgtcatagcccaaagaagatcatcaccgttgattgttttcctct 233  Q
    |||||||||  ||||||  | |||||||||||| | ||||| ||||| || || ||   || |||||||  || ||||||||| || | ||| || | ||    
T  39786251 ctatacttatacaaataccttttgagtggctcagcgtaatcatcaaaccctagtgtccccaaagcccaacaaacatcatcaccattcactgtcttgcgct 39786350  T
Q  234 tctctttctgacacttatcagaagcttctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgcttcttttgagatctttgc 333  Q
    |||| || |||||||| ||||| ||||| |||||||  ||||| | ||||||||| ||||||||||| |  |||||||| || ||||| ||||| |||||    
T  39786351 tctccttgtgacacttgtcagatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtttctttagcatctttcgagatttttgc 39786450  T
Q  334 gtttg 338  Q
     ||||    
T  39786451 atttg 39786455  T

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