View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_low_4 (Length: 494)
Name: NF2382_low_4
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 17983694 - 17983225
Alignment:
| Q |
7 |
tagataattcttatgatgactgaagaaaaaataaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataattttt |
106 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17983694 |
tagataattcttatgatgactgaagaaaaaaaaaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataattttt |
17983595 |
T |
|
| Q |
107 |
aacataacaaagaatttcaggactgtcccttatcatcctcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatcttt |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17983594 |
aacagaacaaagaatttcaggactgtcccttatcatagtcgtcatccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatcttt |
17983495 |
T |
|
| Q |
207 |
ataatgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatttcttcaatgtcgtaaattccgttt |
306 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17983494 |
ataatgataataatcacgaccatcaaaggtaaaaatattatttggatccaccaattctcgataatcagcatgcatttcttcaatgtcgtaaattccgttt |
17983395 |
T |
|
| Q |
307 |
ggaattaatctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtcatcatcgccatcatctggctcatcgatgtccccgtcat |
406 |
Q |
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|||||||||||| || ||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17983394 |
ggaattaatctctttttttgtaaaatatttgtgattaacctacgatcattgtcgtcgtcgtcatcatcgccatcatctggctcattgatgtccccgtcat |
17983295 |
T |
|
| Q |
407 |
cctcatactcgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaacataaac |
476 |
Q |
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| T |
17983294 |
cctcgtactcgtcatggctgtcgttgtcatcatcagtgttgccatcaccagcgttgtcttcaacataaac |
17983225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 476
Target Start/End: Complemental strand, 17976044 - 17975585
Alignment:
| Q |
24 |
gactgaagaaaaaataaacttaagcaaaaagagaagttaagataaagttttatta---ttaatcaatatttattctcataatttttaacataaca----- |
115 |
Q |
| |
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|||||||||||||| || |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17976044 |
gactgaagaaaaaacaatctta-gcaaaaagagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacataaca |
17975946 |
T |
|
| Q |
116 |
aagaatttcaggactgtcccttatcatcctcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatctatatcttcatctttataatgata |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
17975945 |
aagaatttcaggactgtcccttatcatcgtcgtcgtctgtttcttctttgccatcatcaacctcctcagcttcatctatagcttcatcttgaacatgata |
17975846 |
T |
|
| Q |
216 |
ataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatttcttcaatgtcgtaaattccgtttggaattaat |
315 |
Q |
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|||||| |||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17975845 |
gtaatcacgaccatcaaaggtaaaaatgtcgtttgaatccaccaattctcgataatcagcatgcatttcttcaatgtcgtaaattccgtttggaattaat |
17975746 |
T |
|
| Q |
316 |
ctcnnnnnnngtgaaagatttgagattaacctactatcattgttgtcgtcgtcatcatcgccatcatctggctcatcgatgtccccgtcatcctcatact |
415 |
Q |
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||| || ||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |
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| T |
17975745 |
ctctttttttgtaaaatatttgagattaatttacaatcattgtcgtcgtcgtcatcatcgccatcatctaactcattgatgtccccgtcatcctcgtact |
17975646 |
T |
|
| Q |
416 |
cgtcatggctgtcgttatcatcatcagtgttgccatcaccagcgttgtcttcaacataaac |
476 |
Q |
| |
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|| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17975645 |
cgacatggctgtcgttgtcatcatcagtgttgccatcaccagcgtagtcttcaacataaac |
17975585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 17987013 - 17986787
Alignment:
| Q |
18 |
tatgatgactgaag---aaaaaataaacttaagcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataatttttaacataac |
114 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
17987013 |
tatgatgactgaaggaaaaaaaaaaaactta-gcaaaaagagaagttgagataaagttt-attattaatcaatatttattctcataattttttacataac |
17986916 |
T |
|
| Q |
115 |
aaagaatttcaggactgtcccttatcatcc---tcgtcgtccttttcctctttgccatcatcaacctcctcagcttcatc-----tat-atcttcatctt |
205 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
17986915 |
aaagaatttcaggactgttccttatcatcctcttcgtcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctt |
17986816 |
T |
|
| Q |
206 |
tataatgataataatcatgaccatcaaag |
234 |
Q |
| |
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| T |
17986815 |
taacatgataataatcatgaccatcaaag |
17986787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 13148547 - 13148475
Alignment:
| Q |
210 |
atgataataatcatgaccatcaaaggtaaaaacgttatttggatccaccaattctcgataatcagaatgcatt |
282 |
Q |
| |
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|||||||||||||||| ||||| | |||||| ||| || || |||||| |||| |||||||||| ||||||| |
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| T |
13148547 |
atgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattcacgataatcagcatgcatt |
13148475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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