View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_low_5 (Length: 484)
Name: NF2382_low_5
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 11359541 - 11360002
Alignment:
| Q |
16 |
attaacaaaataaaatgtaaaattaataccttgtgatgtgtctaaaagaattatatttagtgttgtgactatagaagaataatctatctttggtttgtaa |
115 |
Q |
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| T |
11359541 |
attaacaaaataaaatgtaaaattgataccttgtgatgtgtctaaaagaattatatttagtgttgtgactattgaagaataatccatctttggtttgtaa |
11359640 |
T |
|
| Q |
116 |
attgtgtaatttctacggtctcggacagtttcttagaatatttcatgtacattttttgaaatatatttttaagaggtataatgatatcccttnnnnnnng |
215 |
Q |
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| T |
11359641 |
attgtgtaatttctacggtctcgcacagtttcttagaatatttcatgtacattttttgaaatatatttttaagaggtattatgatatcccttaaaaaaag |
11359740 |
T |
|
| Q |
216 |
aggtattgtgatatgttaaatcccgcgaacttaacacatttgataaagataatgcataacttatttaaggatcggattttgaaccttcaccactccattt |
315 |
Q |
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| T |
11359741 |
aggtattgtgatatg-taaatcccgcgaacttaacacatttgataaagataatgcataatttatttaaggatcggattttgaaccttcaccacttcattt |
11359839 |
T |
|
| Q |
316 |
atttaccgtnnnnnnntatgaatttctacatactagactacttgactaaaaaattcgacaaatgnnnnnnngagatattatgatatgttaaatcgacaag |
415 |
Q |
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||||||||| ||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11359840 |
atttaccgt-aaaaaatatgaatttttatatactagactacttgattaaaaaattcgacaaatgaaaaaaagagatattatgatatgttaaatcgacaag |
11359938 |
T |
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| Q |
416 |
tgaatcttccgaaaaagattcccnnnnnnnnngaatgcattcaattcaaccacgtctattattctt |
481 |
Q |
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| T |
11359939 |
tgaat-ttccgaaaaaaattccc-taaaaaaagaatgcattcaattcaaccacgtctattattctt |
11360002 |
T |
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