View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2382_low_6 (Length: 475)
Name: NF2382_low_6
Description: NF2382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2382_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 9669691 - 9670130
Alignment:
| Q |
18 |
atcttgtgacacacacgtacccacaaatacaatagggtacagtgataatatatatgcgtgtcattcgaagaaccagaaaattaaaattttgggaacatat |
117 |
Q |
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| T |
9669691 |
atcttgtgacacacacgtacccacaaatacaatagggtacagtgataatatatattcgtgtcattcgaagaaccagaaaattaaaattttgggaacacat |
9669790 |
T |
|
| Q |
118 |
gagcatgtgatggaccagcatcccataattaggtcaataataatatttttgattcagtaaaacacttgcaggcgtgaggtgtgcatgcatactttggcca |
217 |
Q |
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| T |
9669791 |
gagcatgtgatggaccagcatcccataattaggtcaataataatatttttgattcagtgaaacacttgcaggcgtgaggtgtgcatgcatactttggcca |
9669890 |
T |
|
| Q |
218 |
tacctagctactacatgcattcatgactatatgcttaatctaatgtatatacgttaggtaagaatatatgtgggaattaatgagaagnnnnnnnntacat |
317 |
Q |
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| T |
9669891 |
tacctagctactacatgcattcatgactatatgcttaatctaatgtatatacgttaggtaagaatatatgtgggaattaatgagaagaaaaaaaatacat |
9669990 |
T |
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| Q |
318 |
tgagtataagctatatcctcaaaatattgataattatgagacacattatttaaggctagctatagcacactgatacatggatgattattgcacacctgct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9669991 |
tgagtataagctatatcctcaaaatattgataattaggagacacattatttaaggctagctatagcacactgatacatggatgattattgcacacctgct |
9670090 |
T |
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| Q |
418 |
taagggacctctcttccactctcagttttctactagcttt |
457 |
Q |
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| T |
9670091 |
taagggacctctcttccactctcagttttctactagcttt |
9670130 |
T |
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