View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2383_low_1 (Length: 419)

Name: NF2383_low_1
Description: NF2383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2383_low_1
NF2383_low_1
[»] chr4 (29 HSPs)
chr4 (72-257)||(24406228-24406419)
chr4 (72-310)||(24420158-24420386)
chr4 (12-87)||(24406527-24406602)
chr4 (106-243)||(24471268-24471402)
chr4 (1-87)||(24420488-24420574)
chr4 (1-87)||(24471052-24471138)
chr4 (72-257)||(24475844-24476030)
chr4 (1-87)||(24476790-24476876)
chr4 (6-87)||(24420872-24420953)
chr4 (312-359)||(24406184-24406231)
chr4 (25-76)||(24406436-24406487)
chr4 (18-87)||(24420392-24420461)
chr4 (18-87)||(24471165-24471234)
chr4 (9-85)||(24470773-24470849)
chr4 (3-85)||(24420778-24420860)
chr4 (72-129)||(24406458-24406521)
chr4 (3-71)||(24421320-24421388)
chr4 (3-71)||(24470527-24470595)
chr4 (18-86)||(24482187-24482255)
chr4 (6-85)||(24421210-24421289)
chr4 (6-49)||(24477065-24477108)
chr4 (3-71)||(24470335-24470403)
chr4 (6-66)||(24477462-24477522)
chr4 (72-127)||(24477476-24477531)
chr4 (6-56)||(24420327-24420377)
chr4 (12-82)||(24421165-24421235)
chr4 (6-82)||(24420637-24420713)
chr4 (18-58)||(24476729-24476769)
chr4 (14-66)||(24477291-24477343)
[»] chr2 (4 HSPs)
chr2 (18-85)||(41900571-41900638)
chr2 (3-58)||(41899830-41899885)
chr2 (1-64)||(41899872-41899935)
chr2 (72-129)||(41899834-41899891)
[»] scaffold0879 (3 HSPs)
scaffold0879 (6-49)||(4821-4864)
scaffold0879 (9-82)||(4536-4609)
scaffold0879 (6-85)||(4485-4564)
[»] chr1 (4 HSPs)
chr1 (6-63)||(11879361-11879418)
chr1 (18-58)||(11881952-11881992)
chr1 (18-58)||(11891186-11891226)
chr1 (72-124)||(11902065-11902117)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 24406419 - 24406228
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccacc------atctccttcacctcctcgatatcatccctacctctataactcacccccacctc 165  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  24406419 tcaccgccacctccttatatctacaagactccacctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctc 24406320  T
Q  166 ccgcgtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406319 ccgcgtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 310
Target Start/End: Complemental strand, 24420386 - 24420158
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgt 171  Q
    ||||| || ||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||   |    
T  24420386 tcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatct 24420287  T
Q  172 attaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaa 271  Q
    ||||||||| ||| |||    | ||||||   |||||||||||||| |||| ||||||||||||||||||||||| || ||||||||       ||||||    
T  24420286 attaagcttccggctat---tatttgaaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaa 24420197  T
Q  272 acagtctactctccacattgaattaagagccttattttg 310  Q
    | ||||||  ||  ||| |||||||||||||||||||||    
T  24420196 aaagtctatgctttacagtgaattaagagccttattttg 24420158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 24406602 - 24406527
Alignment:
Q  12 tatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24406602 tatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccaccacctcctt 24406527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 24471268 - 24471402
Alignment:
Q  106 ctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttt 205  Q
    ||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||||   |||||||||| ||| |||    | |||||||||||    
T  24471268 ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctat---catttgaaattttt 24471364  T
Q  206 tcaatgaattatgttcaacattgttgtggttaatttgt 243  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  24471365 tcaatgaattatattcagcattgttgtggttaatttgt 24471402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24420574 - 24420488
Alignment:
Q  1 cccctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||    
T  24420574 cccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtctataagtcacctccacctcctt 24420488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 24471052 - 24471138
Alignment:
Q  1 cccctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||    
T  24471052 cccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctccaccctatgtccataagtcacctccacctcctt 24471138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 24476030 - 24475844
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgt 171  Q
    ||||| || ||||||| ||| || ||| |||| ||||| |||||||| | |||||||| || |||| || | ||||| ||||||||||| |||||||  |    
T  24476030 tcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtct 24475931  T
Q  172 attaag-ctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 257  Q
    |||||| ||| ||| ||||   | ||||||||||||||| ||||||| |||| ||||||| ||||||||||||||  ||||||||||    
T  24475930 attaaggcttccggctatagttatttgaaattttttcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgt 24475844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24476876 - 24476790
Alignment:
Q  1 cccctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||  ||||||||||    
T  24476876 cccctcctccatatgtttatgaatctccacccccaccatctccttcacctcccccatcctatgtctataagtcacatccacctcctt 24476790  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 24420953 - 24420872
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| | ||||||||| ||||||||||    
T  24420953 cctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctcctt 24420872  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
Q  312 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406231 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 24406184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 24406487 - 24406436
Alignment:
Q  25 ctccacccccaccatctccttcacctcctccaccttatgtctttaagtcacc 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24406487 ctccacctccaccatctccttcacctcctccaccttatgtctttaagtcacc 24406436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 24420461 - 24420392
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||    
T  24420461 tacaaatctccacctccaccttctccatcacctcctccaccatatggctataagtcaccgccacctcctt 24420392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 24471165 - 24471234
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcctt 87  Q
    |||||||||||||| ||||| ||||| |||||||||||||| ||||||| || |||||||||||||||||    
T  24471165 tacaaatctccacctccaccttctccatcacctcctccaccatatgtctataggtcaccgccacctcctt 24471234  T

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Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 24470773 - 24470849
Alignment:
Q  9 ccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcc 85  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| | ||||||||| || |||||    
T  24470773 ccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccacctcctcc 24470849  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 24420860 - 24420778
Alignment:
Q  3 cctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcc 85  Q
    |||||||||||||||||||| || |||||||||||||| ||||| ||||||||||| ||| | | |||||| || ||||||||    
T  24420860 cctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctcc 24420778  T

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Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 24406521 - 24406458
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccacc------atctccttcacctcctc 129  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  24406521 tcaccgccacctccttatatctacaagactccacctccacctccaccatctccttcacctcctc 24406458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 24421388 - 24421320
Alignment:
Q  3 cctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaag 71  Q
    |||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||| ||||    
T  24421388 cctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24421320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 24470527 - 24470595
Alignment:
Q  3 cctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaag 71  Q
    |||||||||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||| ||||    
T  24470527 cctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataag 24470595  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 24482255 - 24482187
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcct 86  Q
    |||||||||||||| ||||||||||| ||||| || || |||||||||| ||| ||||| |||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttatgtctataaatcaccaccacctcct 24482187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 24421289 - 24421210
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcc 85  Q
    ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||||||||| |  |||||||| ||||||||    
T  24421289 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctcc 24421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 24477108 - 24477065
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacc 49  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  24477108 cctccatatgtttacaaatctccacccccaccatcccctccacc 24477065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 24470335 - 24470403
Alignment:
Q  3 cctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaag 71  Q
    |||||||||||||| ||||| || ||||| || ||||| ||||||||||| ||||| ||||||| ||||    
T  24470335 cctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataag 24470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 24477522 - 24477462
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtct 66  Q
    ||||||||||| ||||| || ||||| || ||||||||||||||||| ||||| |||||||    
T  24477522 cctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtct 24477462  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 24477531 - 24477476
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcc 127  Q
    ||||| |||||||| ||| |||||||| | |||||||| |||||||||||||||||    
T  24477531 tcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcc 24477476  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 24420377 - 24420327
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctcca 56  Q
    ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  24420377 cctccttatatttacaagtctccacctccaccatctccatcacctcctcca 24420327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 24421235 - 24421165
Alignment:
Q  12 tatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacc 82  Q
    ||||||||||| || ||||| || ||||| |||||||||||||| || |||||||  |||||||| |||||    
T  24421235 tatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccacc 24421165  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 24420713 - 24420637
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacc 82  Q
    |||||||| ||||| |||||||| || ||||||||||||||||| || || || ||| |||  |||||||| |||||    
T  24420713 cctccatacgtttataaatctcctcctccaccatctccttcaccaccgcctccatatatctacaagtcaccaccacc 24420637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 24476769 - 24476729
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccacc 58  Q
    |||||||||||||| ||||| ||||| ||||||||||||||    
T  24476769 tacaaatctccacctccaccttctccatcacctcctccacc 24476729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 24477343 - 24477291
Alignment:
Q  14 tgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtct 66  Q
    |||||||||||| ||||| || ||||| ||||| |||||| ||||||||||||    
T  24477343 tgtttacaaatcaccaccacctccatccccttcccctccttcaccttatgtct 24477291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 41900638 - 41900571
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcc 85  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||||||||    
T  41900638 tacaaatctccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctcc 41900571  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 41899885 - 41899830
Alignment:
Q  3 cctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccacc 58  Q
    |||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||    
T  41899885 cctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccacc 41899830  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41899935 - 41899872
Alignment:
Q  1 cccctcctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgt 64  Q
    |||||||||||||||  ||||| ||||| ||||||||||| |||||||| ||||| || |||||    
T  41899935 cccctcctccatatgcgtacaagtctcctcccccaccatcaccttcaccgcctcctccatatgt 41899872  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 41899891 - 41899834
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctc 129  Q
    |||||||| ||||| ||| | |||||| ||||||||||||| ||| ||||||||||||    
T  41899891 tcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctc 41899834  T

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Target: scaffold0879 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 4821 - 4864
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacc 49  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  4821 cctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

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Target: scaffold0879; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 4536 - 4609
Alignment:
Q  9 ccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacc 82  Q
    |||||||||||||| || ||||| || ||||| |||||||||||||| || |||||||  |||||||| |||||    
T  4536 ccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccacc 4609  T

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Target: scaffold0879; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 4485 - 4564
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatgtctttaagtcaccgccacctcc 85  Q
    ||||||||||| ||||| ||||| || |||||||| || |||||||| ||||| ||||| |  |||||||| ||||||||    
T  4485 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctcc 4564  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 11879361 - 11879418
Alignment:
Q  6 cctccatatgtttacaaatctccacccccaccatctccttcacctcctccaccttatg 63  Q
    ||||| |||||||||||||| ||||| || ||||| || |||||||| ||||||||||    
T  11879361 cctccttatgtttacaaatcgccacctcctccatccccatcacctccaccaccttatg 11879418  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 11881952 - 11881992
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccacc 58  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  11881952 tacaagtcaccacccccaccatctccatcacctcctccacc 11881992  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 11891186 - 11891226
Alignment:
Q  18 tacaaatctccacccccaccatctccttcacctcctccacc 58  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  11891186 tacaagtcaccacccccaccatctccatcacctcctccacc 11891226  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 11902065 - 11902117
Alignment:
Q  72 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacc 124  Q
    ||||| |||||||||||| | |||||| | ||||| |||||||||||||||||    
T  11902065 tcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

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