View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2384_low_1 (Length: 527)
Name: NF2384_low_1
Description: NF2384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2384_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 24833362 - 24833746
Alignment:
| Q |
20 |
gtggaaacagagtattacaaagatctcaacagcgtagacaaacatcatcacacggtatttagttccattcctacttgactagtattattttttctcaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24833362 |
gtggaaacagagtattacaaagatctcaacagcgtagacaaacatcatcacacggtatttagttccattcctacttgactagtattattttttctcaaaa |
24833461 |
T |
|
| Q |
120 |
tattcaaagtatctcacaaatacattcatgtacatactttgtagaat---taatattttttgtttaagtcaatttgttttgcaaaatattgaacacattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24833462 |
tattcaaagtatctcacaaatacattcatgtacatactttgtagaattaataatattttttgtttaagtcaatttgttttgcaaaatattgaacacattt |
24833561 |
T |
|
| Q |
217 |
tactttccagtagtaatttctaatggagtgagaactttattactgt--catcnnnnnnnnntggagcgagaactttatatattcaattattgccaacgaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24833562 |
tactttccagtagtaatttctaatggagtgagaactttattactgtaaaaaaaataaaaaatggagcgagaactttatatattcaattaatgccaacgaa |
24833661 |
T |
|
| Q |
315 |
ccatatttaatagatcacctagatttgcatctagcatttacacatcgatt-------tggattcttttgttatcacgaccaaggg |
392 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24833662 |
ccatatttaatagataccctagatttacatctagcatttacacatcgatttggattctggattcttttgttatcacgaccaaggg |
24833746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University