View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2385_high_4 (Length: 381)
Name: NF2385_high_4
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2385_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 4047175 - 4047537
Alignment:
| Q |
16 |
atgtctacacttcctccaacaatgctatttgatccgtccattttcaaaatctagaggaaatttcatgggggaaaatttaatgaaaattaaacacataatc |
115 |
Q |
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| T |
4047175 |
atgtctacacttcctccaacaatgctatttgatccgtccattttcaaaatctagaggaaatttcatgggggaaaatttaatgaaaattaaacacataatc |
4047274 |
T |
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| Q |
116 |
atggatgtacacatacaaaatagatttaagactttcacacatcataagacttgttgttcaaacaattgtcgttcnnnnnnntatgtatcatcttgatttg |
215 |
Q |
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| T |
4047275 |
atggatgtacacatacaaaatagatttaagactttcacacatcataagacttgttgttcaaacaattgtcgttcaaaaaaatatgtatcttcttgatttg |
4047374 |
T |
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| Q |
216 |
tcatgacaagagaacaagagattttcatgannnnnnnnatattaataaagagctcttgtaatcatttagtgggggtttggatgcccatttgcaccttgaa |
315 |
Q |
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| T |
4047375 |
tcatgacaagagaacaagagattttcatgatttttgttatattaataaagagctcttgtaatcatttagtgggggtttggatgcccatttgcaccttgaa |
4047474 |
T |
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| Q |
316 |
tatcacgtttcgatgcacttttagacgtgaaaatggaaaagccacaatatgtagcgccttcat |
378 |
Q |
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| T |
4047475 |
tatcacgttttgatgcatttttagatgtgaaaatggaaaagccacaatatgtagcgccttcat |
4047537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 4747918 - 4747839
Alignment:
| Q |
290 |
gtttggatgcccatttgcaccttgaatatcacgtttcgatgcacttttagacgtgaaaatggaaaagccacaatatgtagc |
370 |
Q |
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| T |
4747918 |
gtttggatgcacgtttacaccttaaatatcacgtttcgaggcac-tttagatgggaaaatggagaagccacaatatgtagc |
4747839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 21524161 - 21524103
Alignment:
| Q |
307 |
caccttgaatatcacgtttcgatgcacttttagacgtgaaaatggaaaagccacaatatg |
366 |
Q |
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| T |
21524161 |
caccttaaatatcacgtttcgaggcac-tttagatgggaaaatggagaagccacaatatg |
21524103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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