View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2385_high_5 (Length: 375)
Name: NF2385_high_5
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2385_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 35096385 - 35096147
Alignment:
| Q |
17 |
attattatgttatctacaacgttaactgtgtgctttacatgaagaaaatcaagtaattagattagactaaccatatatgttatgtatgatgattagttaa |
116 |
Q |
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| T |
35096385 |
attattatgttatctacaacgttaactgtgtgctttacatgaagaaaatcaagtaattagattagactaaccatat-----------------tagttaa |
35096303 |
T |
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| Q |
117 |
ttagtaatgcttggtattcaaaggctggccgtgcatttctggtatgcgaaggaattttctttgataaacacaaaaattaaataaaattaaggacttggtc |
216 |
Q |
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| T |
35096302 |
ttagtaatgcttggtattcaaaggctggccgtgcatttctggtatgcgaaggaattttctttgataaacacaaaaattaaataaaattaaggacttggtc |
35096203 |
T |
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| Q |
217 |
aattgattattaattaatctcactcactctatggatctctatttctatctgaattaatt |
275 |
Q |
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| T |
35096202 |
aattg---attaattaatctcactcactctatggatctctatttctatctgaattaatt |
35096147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 35096094 - 35096046
Alignment:
| Q |
323 |
ttactctattattagctttgtttctttctgctccttgcctttgcttctc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35096094 |
ttactctattattagctttgtttctttctgctccttgcgtttgtttctc |
35096046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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