View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2385_high_6 (Length: 364)

Name: NF2385_high_6
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2385_high_6
NF2385_high_6
[»] chr2 (13 HSPs)
chr2 (8-348)||(16815612-16815945)
chr2 (8-348)||(16854769-16855102)
chr2 (95-343)||(23009020-23009264)
chr2 (77-243)||(25923565-25923732)
chr2 (76-203)||(28922486-28922614)
chr2 (82-286)||(22565627-22565832)
chr2 (159-245)||(24527347-24527432)
chr2 (176-245)||(24522581-24522649)
chr2 (285-342)||(28919044-28919101)
chr2 (166-228)||(25533165-25533227)
chr2 (77-121)||(25533260-25533304)
chr2 (8-59)||(25923760-25923811)
chr2 (313-343)||(25533080-25533110)
[»] chr5 (16 HSPs)
chr5 (77-342)||(31213346-31213606)
chr5 (64-345)||(34489720-34489995)
chr5 (88-288)||(31599079-31599279)
chr5 (83-255)||(20547424-20547598)
chr5 (90-245)||(24319568-24319724)
chr5 (88-248)||(24263013-24263174)
chr5 (77-260)||(19054031-19054215)
chr5 (82-240)||(25571442-25571599)
chr5 (77-348)||(9834320-9834584)
chr5 (82-245)||(23771943-23772106)
chr5 (285-342)||(25405269-25405326)
chr5 (126-252)||(9826259-9826386)
chr5 (18-59)||(31599003-31599044)
chr5 (8-59)||(24319474-24319525)
chr5 (177-224)||(26120801-26120848)
chr5 (319-348)||(24319791-24319820)
[»] chr7 (15 HSPs)
chr7 (92-342)||(8316065-8316309)
chr7 (77-348)||(19202297-19202561)
chr7 (77-343)||(13251758-13252018)
chr7 (90-248)||(6038308-6038468)
chr7 (100-348)||(12389383-12389625)
chr7 (154-287)||(5107707-5107840)
chr7 (88-247)||(20578398-20578559)
chr7 (166-348)||(4985823-4986000)
chr7 (166-348)||(4989921-4990098)
chr7 (77-238)||(39269245-39269405)
chr7 (90-219)||(19155469-19155601)
chr7 (90-219)||(20754868-20755000)
chr7 (8-59)||(13251679-13251730)
chr7 (18-57)||(20578587-20578626)
chr7 (13-59)||(19202588-19202634)
[»] chr8 (14 HSPs)
chr8 (8-342)||(21320398-21320728)
chr8 (77-343)||(18571358-18571616)
chr8 (19-342)||(29761764-29762082)
chr8 (91-260)||(24721340-24721507)
chr8 (77-348)||(17099185-17099450)
chr8 (95-263)||(17511824-17511995)
chr8 (77-260)||(26828751-26828936)
chr8 (166-348)||(25231518-25231694)
chr8 (82-235)||(17964085-17964242)
chr8 (205-348)||(15175547-15175682)
chr8 (90-245)||(21230208-21230360)
chr8 (82-130)||(28857641-28857689)
chr8 (8-59)||(24721248-24721299)
chr8 (18-59)||(18571644-18571685)
[»] chr6 (9 HSPs)
chr6 (18-342)||(22570708-22571028)
chr6 (94-342)||(11176602-11176847)
chr6 (77-248)||(21844704-21844877)
chr6 (90-346)||(22525676-22525928)
chr6 (77-201)||(9870260-9870384)
chr6 (88-247)||(23843712-23843872)
chr6 (83-287)||(28588122-28588325)
chr6 (8-59)||(9870181-9870232)
chr6 (18-59)||(21844633-21844674)
[»] chr4 (10 HSPs)
chr4 (13-263)||(13130780-13131033)
chr4 (65-211)||(12608896-12609043)
chr4 (77-343)||(25097169-25097423)
chr4 (185-342)||(17109568-17109717)
chr4 (91-287)||(9054912-9055109)
chr4 (88-197)||(17109968-17110078)
chr4 (285-348)||(11783203-11783266)
chr4 (172-210)||(12608839-12608877)
chr4 (289-342)||(12608744-12608797)
chr4 (65-116)||(11933928-11933979)
[»] chr3 (19 HSPs)
chr3 (8-348)||(12770153-12770489)
chr3 (82-348)||(34275488-34275748)
chr3 (91-349)||(8766501-8766753)
chr3 (88-255)||(13586496-13586665)
chr3 (82-348)||(19166330-19166587)
chr3 (83-263)||(19913482-19913663)
chr3 (91-260)||(8771465-8771636)
chr3 (65-269)||(17142252-17142457)
chr3 (92-263)||(8146734-8146907)
chr3 (177-343)||(16226152-16226314)
chr3 (77-222)||(8880421-8880567)
chr3 (13-59)||(8878743-8878789)
chr3 (88-178)||(16227053-16227143)
chr3 (98-201)||(5633599-5633702)
chr3 (285-347)||(8880591-8880652)
chr3 (8-59)||(19913696-19913747)
chr3 (8-59)||(34275404-34275455)
chr3 (13-59)||(8766775-8766821)
chr3 (8-49)||(16227161-16227202)
[»] chr1 (4 HSPs)
chr1 (77-348)||(18828213-18828477)
chr1 (167-345)||(16115646-16115819)
chr1 (82-136)||(17610397-17610451)
chr1 (174-245)||(17610498-17610568)
[»] scaffold0072 (1 HSPs)
scaffold0072 (176-287)||(39088-39199)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 16815945 - 16815612
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttgcttcataaattttttccattaggagtgctccatatgaatgttattttt 107  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  16815945 agcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcataaattttttccattatgagtgctccatatgaatgttattttt 16815846  T
Q  108 gctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaagccacccttttat 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  16815845 gctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac--ttttctttggtaccttgagcctttcaagccacccttttat 16815748  T
Q  208 attcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaacttta 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  16815747 attcatattatcctttgtgaaaccactttgagcctccagataaaaatttctttcttgttacttagtgaagga-----tcatgtcacaatcctgaacttta 16815653  T
Q  308 aatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  16815652 aatgcaccctgtttgatttcacttggagttagataggtatt 16815612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 16855102 - 16854769
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttgcttcataaattttttccattaggagtgctccatatgaatgttattttt 107  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  16855102 agcataaccggtgagatttagagccaaatattttcatatccattctaggttgtttcataaattttttccattatgagtgctccatatgaatgttattttt 16855003  T
Q  108 gctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaagccacccttttat 207  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  16855002 gctcgaatttgcggccgttctttacggacgatcggttagattataatacacatgacac--ttttctttggtaccttgagcctttcaagccacccttttat 16854905  T
Q  208 attcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaacttta 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||    
T  16854904 attcatattatcctttgtgaaaccactttgagcctccagataaaaatttctttcttgttacttagtgaagga-----tcatgtcacaatcctgaacttta 16854810  T
Q  308 aatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  16854809 aatgcaccctgtttgatttcacttggagttagataggtatt 16854769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 95 - 343
Target Start/End: Original strand, 23009020 - 23009264
Alignment:
Q  95 gaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacga--ca-catttttctttggtaccttgagccttt 191  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||  || ||||||| | |||||||||||||||||    
T  23009020 gaatgctatttttgctcgaatttgcggccgttttttacggacgatcggttaaattataatacacacgatgcatcatttttatctggtaccttgagccttt 23009119  T
Q  192 caagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtc 291  Q
    ||||||||  |||||||||| ||||||||||||||||| ||||||||||| ||||||  ||||| ||||||||||||| ||||| | |     |||||||    
T  23009120 caagccacaattttatattcttattatcctttgtgaaaccactttgagcc-ccagat-gaaattactttcttgttactaagtgacgaa-----tcatgtc 23009212  T
Q  292 acaatcctgaactttaaatgcaccctatttgatttcacttggagttagatag 343  Q
    | | |||| ||| |||||||||| || ||||||||| |||| ||||||||||    
T  23009213 aaagtcctaaaccttaaatgcactctgtttgatttctcttgcagttagatag 23009264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 25923732 - 25923565
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttcttt 175  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||  ||||| |||||||||  || |||||||||    
T  25923732 attatgagtgttccatatgaatgttatttttgcttgaattttcggccgttctttactgacgatcggttaagttatattacacacgaggcaatttttcttt 25923633  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctc 243  Q
    ||||||| ||||||||||||||||||| ||||||||   |||||||||||||||  ||||||||||||    
T  25923632 ggtacctagagcctttcaagccaccctattatattctatttatcctttgtgaaactactttgagcctc 25923565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 28922614 - 28922486
Alignment:
Q  76 cattaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctt 174  Q
    ||||| ||||| |||||||||||| |||||||||| |||||| ||| ||||||||||||||||| | |||| |||| ||||||||||  || ||||||||    
T  28922614 cattatgagtgttccatatgaatgctatttttgcttgaatttacggtcgttctttacggacgatcgattaggttattatacacacgaggcattttttctt 28922515  T
Q  175 tggtaccttgagcctttcaagccaccctt 203  Q
    |||||||||||||||| |||||| |||||    
T  28922514 tggtaccttgagccttccaagccgccctt 28922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 82 - 286
Target Start/End: Original strand, 22565627 - 22565832
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttgg-tac 180  Q
    ||||| |||| |||||||||||||||||| ||||||| ||  |||| ||||  || ||  || |  ||||| |||||||||  || |||| ||||| |||    
T  22565627 gagtgttccaaatgaatgttatttttgcttgaatttgtggttgttccttacaaacaatcagtcatgttatattacacacgatgcaattttttttgggtac 22565726  T
Q  181 cttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttc-tttcttgttacttagtgaagga 279  Q
    ||| ||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||| | || |||||| ||| |||||||| ||||| | |    
T  22565727 cttaagcctttcaagccacccttttatattcttatcatcctttgtgaaacccctttgagcctcca-aaaataatttcttttgttgttactaagtgacgaa 22565825  T
Q  280 tcatgtc 286  Q
    |||||||    
T  22565826 tcatgtc 22565832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 24527432 - 24527347
Alignment:
Q  159 acgacacatttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    |||| ||| |||| ||||||||||||||||||| |||||| ||||  |||||| ||||||||||||||||| | |||||||||||||    
T  24527432 acgagacaattttttttggtaccttgagccttttaagccatccttc-atattcttattatcctttgtgaaacctctttgagcctcca 24527347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 24522649 - 24522581
Alignment:
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||||||||||| | |||||||||||||    
T  24522649 ggtaccatgagccttttaagccacccttt-atattcttattatcctttgtgaaacctctttgagcctcca 24522581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 28919101 - 28919044
Alignment:
Q  285 tcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    |||||||||||||||  |||||||||||||||||| |||||||| |||||||||||||    
T  28919101 tcatgtcacaatcctacactttaaatgcaccctatctgatttcaattggagttagata 28919044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 25533227 - 25533165
Alignment:
Q  166 atttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaa 228  Q
    |||||||||||||||||  |||||||||||| ||||| |||||||| ||||||||||| ||||    
T  25533227 atttttctttggtacctaaagcctttcaagcgaccctattatattcttattatcctttatgaa 25533165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25533304 - 25533260
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcgg 121  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||    
T  25533304 attatgagtgttccatatgaatgttatttttgcttgaatttgcgg 25533260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 25923811 - 25923760
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| |||||||||| |||||||||||| |||||||||    
T  25923811 agcataaccggtgagattcagagccaaattttttcatatccattctaggttg 25923760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 25533110 - 25533080
Alignment:
Q  313 accctatttgatttcacttggagttagatag 343  Q
    |||||||||||||||||||||||||||||||    
T  25533110 accctatttgatttcacttggagttagatag 25533080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 77 - 342
Target Start/End: Complemental strand, 31213606 - 31213346
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttcttt 175  Q
    |||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||| |||||||||| ||| |||||||||    
T  31213606 attatgagtgttctatatgaatgttatttttgcttgaatttgcggcagttctttacggaccattcgttagattattatacacacgagacaatttttcttt 31213507  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
    |||||||||||||||||||||||||| ||||||||  || ||||||||||||||  |||||||||||| |||  ||| |||||||| || ||||||||||    
T  31213506 ggtaccttgagcctttcaagccacccatttatatttttagtatcctttgtgaaactactttgagcctctagacgaaattttctttcatg-tacttagtga 31213408  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
     | |     ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  31213407 tgaa-----tcatgtcacaatcctgaactttaaatgcaccctgtttgatttcacttgaagttagata 31213346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 64 - 345
Target Start/End: Complemental strand, 34489995 - 34489720
Alignment:
Q  64 ataaattttttccattaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgac 163  Q
    ||||||| |||  |||| ||||| |||||||||||| ||| ||||  |||||||||||| |||||||||||||||| | |||  |||||||||||||||     
T  34489995 ataaattctttatattatgagtgttccatatgaatgctatctttgtccgaatttgcggcagttctttacggacgatcgattaagttataatacacacgag 34489896  T
Q  164 acatttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttctt 263  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||||| |  | ||  |||||||||||||    
T  34489895 gcatttttctttggtaccttgagccttttaagccacccttttatattcttattatcatttttgaaaccactttgagcttttacat-gaaatttctttctt 34489797  T
Q  264 gttacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagat 345  Q
    |||||| ||||| | |     |||||||||| |||| ||| ||||||||||||| ||||||||| |||||||||||||||||    
T  34489796 gttactaagtgacgaa-----tcatgtcacagtcctaaaccttaaatgcaccctgtttgatttctcttggagttagatagat 34489720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 88 - 288
Target Start/End: Original strand, 31599079 - 31599279
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||   ||  |||||||||||||| || |||||    
T  31599079 tccatatgaatgttatttttgctcgaatttgcggccgttctttacagacgatcggttagattataatacagctgagtcatttttctttggtgccatgagc 31599178  T
Q  188 ctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtca 287  Q
    ||||| ||| |||| ||||||||  ||||||||||||||||| || ||||||||||||||| ||||||  |||  || |||||||| | | |||||||||    
T  31599179 ctttctagcaacccatttatattattattatcctttgtgaaaccaatttgagcctccagatgaaaattgattttctgctacttagtaacgaatcatgtca 31599278  T
Q  288 t 288  Q
    |    
T  31599279 t 31599279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 20547424 - 20547598
Alignment:
Q  83 agtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacga-cacatttttctttggtacc 181  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  ||||| |||| ||||  | ||||| ||||||||||    
T  20547424 agtgttccatatgaatgttatttttgcttgaatttgcggccgttctttacggacgatcggttaagttatattacaaacgaggaaattttactttggtacc 20547523  T
Q  182 ttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccaga-taaaaatt 255  Q
    | ||| ||||||||||||||| |||||||  ||||||||||||||  | ||||||||||||||||| ||||||||    
T  20547524 tagagtctttcaagccaccctattatatttttattatcctttgtgggaccactttgagcctccagactaaaaatt 20547598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 24319568 - 24319724
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcct 189  Q
    ||||||| || |||||||||  |||||||  | ||||||||||||||||| || ||| |||| ||||||||||  || |||||||| ||||||||| |||    
T  24319568 catatgagtgctatttttgcatgaatttgttgtcgttctttacggacgatcggctaggttattatacacacgaggcaattttctttagtaccttgatcct 24319667  T
Q  190 ttcaagccaccc-ttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    ||||| |||||| |||||||||| |||||| |||||||||| |||||||||||||||    
T  24319668 ttcaacccaccctttttatattcttattatgctttgtgaaaccactttgagcctcca 24319724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 88 - 248
Target Start/End: Complemental strand, 24263174 - 24263013
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca--tttttctttggtaccttga 185  Q
    |||||||||||  | ||||||||||||||| ||| ||||||||||  |||||  ||||  ||||| ||||||||| |||  |||||||| ||||  ||||    
T  24263174 tccatatgaatactgtttttgctcgaatttacggtcgttctttacatacgatcagttaagttatattacacacgagacaattttttcttaggtagtttga 24263075  T
Q  186 gcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagat 248  Q
    |  |||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  24263074 gattttcaagccacccttt-atattcttattatcctttgtgaaaccactttgagcctccagat 24263013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 19054215 - 19054031
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttcttt 175  Q
    |||| ||||| |||||  ||||| |||| ||||| ||||||||| | |||||||| ||||||| |||||| ||||| ||||  ||| || ||||||||||    
T  19054215 attatgagtgttccattagaatgctattattgcttgaatttgcgactgttctttatggacgatcggttaggttatattacatgcgagaccatttttcttt 19054116  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttcttt 260  Q
    |||||||  || |||||||| | | || |||||||| ||||||||||| ||||| |||||||| | ||||||  |||||||||||    
T  19054115 ggtacctaaagtctttcaagacgctctgttatattcttattatcctttatgaaaccactttgaacttccagacgaaaatttcttt 19054031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 240
Target Start/End: Original strand, 25571442 - 25571599
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtacc 181  Q
    ||||| |||||||||||||||||||||||||||||| | | ||||||||| ||||||| ||| |  ||| | |||||| || | |||||| ||| |||||    
T  25571442 gagtgttccatatgaatgttatttttgctcgaattttctgtcgttctttaaggacgatcggtcatgttaaattacacatgatatattttt-tttagtacc 25571540  T
Q  182 ttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagc 240  Q
    | ||||||||||||||| |   |||| ||| ||||||||||||||||| | ||||||||    
T  25571541 tcgagcctttcaagccatctaattattttcttattatcctttgtgaaacccctttgagc 25571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 348
Target Start/End: Complemental strand, 9834584 - 9834320
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttcttt 175  Q
    |||| ||||| |||||||||||| |||| || |  |||| || || ||||| ||||||||||| | |||  ||||| ||||||||| ||| |||||||||    
T  9834584 attatgagtgatccatatgaatgctattattacctgaatgtgtggtcgttccttacggacgatcgattaagttatattacacacgagacaatttttcttt 9834485  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
    |||||||  || |||||||||||||   ||||| |  ||||||||| ||||||| |||||||||||| |||| ||||  || ||  || ||| ||||| |    
T  9834484 ggtacctaaagtctttcaagccacctcgttatacttttattatcctatgtgaaaccactttgagccttcagacaaaagattatt--ttttta-ttagtta 9834388  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
     | |     |||||||||| ||||  | |||||||||||||| ||||||||||||||||||||||||| ||||    
T  9834387 cgaa-----tcatgtcacattcctacaatttaaatgcaccctgtttgatttcacttggagttagataggtatt 9834320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 245
Target Start/End: Complemental strand, 23772106 - 23771943
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacattt-ttctttggtac 180  Q
    ||||| ||||||||| || ||||||||||| |||||| || ||||||||||||||||| || |   | ||||||  ||||| ||| || || |||| |||    
T  23772106 gagtgttccatatgattgctatttttgctcaaatttgaggtcgttctttacggacgatcgggtttgtcataatatgcacgagacaattattttttgatac 23772007  T
Q  181 cttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    ||||||||||||||||||| || | | |||| ||||||||||||||||| |||||||| ||||||    
T  23772006 cttgagcctttcaagccacactgt-acattcttattatcctttgtgaaaccactttgaacctcca 23771943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 25405269 - 25405326
Alignment:
Q  285 tcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  25405269 tcatgtcacagtcctacactttaaatgcaccctatttgatttcacttggagttagata 25405326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 9826386 - 9826259
Alignment:
Q  126 tctttacggacgattggttagattataatacacacgac-acatttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttg 224  Q
    |||||||||||||| | |||  ||||| |||||||||  | |||||||||||||||||  || |||||||||||||   ||||| |  ||||||||| ||    
T  9826386 tctttacggacgatcgattaagttatattacacacgaggaaatttttctttggtacctaaagtctttcaagccacctcgttatacttttattatcctatg 9826287  T
Q  225 tgaaatcactttgagcctccagataaaa 252  Q
    ||||| ||||||||||||||||| ||||    
T  9826286 tgaaaccactttgagcctccagacaaaa 9826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 31599003 - 31599044
Alignment:
Q  18 gtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  31599003 gtgagattcagagccaaatattttcatatccattctaggttg 31599044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 24319474 - 24319525
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| |||||||||||||||| |||||| |||||||||    
T  24319474 agcataaccggtgagattcagagccaaatattttcttatccattctaggttg 24319525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 26120848 - 26120801
Alignment:
Q  177 gtaccttgagcctttcaagccacccttttatattcatattatcctttg 224  Q
    ||||||| |||||||||||||||| |||||||||| ||||||| ||||    
T  26120848 gtaccttaagcctttcaagccaccgttttatattcttattatcttttg 26120801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 348
Target Start/End: Original strand, 24319791 - 24319820
Alignment:
Q  319 tttgatttcacttggagttagatagatatt 348  Q
    ||||||||||||||||||||||||||||||    
T  24319791 tttgatttcacttggagttagatagatatt 24319820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 92 - 342
Target Start/End: Original strand, 8316065 - 8316309
Alignment:
Q  92 tatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagccttt 191  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| || ||| | ||||||||||||||||  |||||||||||||||||||||| ||||    
T  8316065 tatgaatgttatttttgctcgaatttacggtcgttctttacggacaatcggtaatattataatacacacgaggcatttttctttggtaccttgagtcttt 8316164  T
Q  192 caagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtc 291  Q
    ||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||| || | |     |||||||    
T  8316165 caaaccacccttttatattctcattatcctttgtgaaaccactttgagcctccagat-gaagtttctttcttgttacttagcgaggaa-----tcatgtc 8316258  T
Q  292 acaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    ||| |||||||| ||||||||| | | ||||||||| ||||||||||||||    
T  8316259 acagtcctgaaccttaaatgcatcttgtttgatttctcttggagttagata 8316309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 77 - 348
Target Start/End: Complemental strand, 19202561 - 19202297
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttcttt 175  Q
    |||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||  ||||| ||||| ||||||||| || ||||||||||    
T  19202561 attatgagtgttccatatgaatgctatttttgcttgaatttgcggccgttctttacgaacgatcagttaggttatattacacacgagacaatttttcttt 19202462  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
    ||||||| ||||||||||||||||||| |||||||| |||| || ||||||||| ||| ||||||||| |||  ||||||||||| |  ||| |||| ||    
T  19202461 ggtacctagagcctttcaagccaccctattatattcttattgtcttttgtgaaaccac-ttgagcctctagacgaaaatttcttt-tcatta-ttagcga 19202365  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
     | |     |||||||||| ||||  ||||||||||||||||  ||||||||||||| |||||||||| ||||    
T  19202364 cgaa-----tcatgtcacattcctacactttaaatgcaccctgcttgatttcacttgcagttagataggtatt 19202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 77 - 343
Target Start/End: Original strand, 13251758 - 13252018
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttcttt 175  Q
    |||| ||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||||||| |||| ||||| ||||||||| || ||||||||||    
T  13251758 attatgagtgttccatatgaatgctatttttgcttgaatttgcggtcgttctttacggacgattgattaggttatattacacacgagacaatttttcttt 13251857  T
Q  176 ggtaccttgagcctttcaagccaccctt--ttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagt 273  Q
    || ||||||||||||| || ||||||||  |||||||| ||||||||||||||||| ||| |||||||||||||  ||| ||||||  || ||  |||||    
T  13251858 ggcaccttgagccttttaatccaccctttattatattcttattatcctttgtgaaaccac-ttgagcctccagacgaaattttctt--ttctttattagt 13251954  T
Q  274 gaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatag 343  Q
    || |     | |||||||||| ||||| ||  || ||| |||||||||||||||||||||||||||||||    
T  13251955 gatg-----tatcatgtcacagtcctgcac-gtacatgaaccctatttgatttcacttggagttagatag 13252018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 248
Target Start/End: Original strand, 6038308 - 6038468
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca--tttttctttggtaccttgagc 187  Q
    |||||| |||||||||||||||||||||| ||| |||||||||||||||| |||||  ||||| |||||| || |||  ||||| ||||||||||| |||    
T  6038308 catatggatgttatttttgctcgaatttgtggctgttctttacggacgatcggttaagttatattacacatgagacaattttttatttggtaccttcagc 6038407  T
Q  188 ctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagat 248  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||    
T  6038408 ctttcaagccacccttttatatttttattatcctttgtgaaatcacttaaagcctccagat 6038468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 348
Target Start/End: Complemental strand, 12389625 - 12389383
Alignment:
Q  100 ttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtaccttgagcctttcaagcca 198  Q
    ||||||||||| |||||| ||||||||| |||||||||||  ||||| ||||| ||||||||| ||| ||||||||||||||||  |||||||||| |||    
T  12389625 ttatttttgcttgaattttcggccgttcattacggacgatcagttaggttatattacacacgagacaatttttctttggtacctatagcctttcaatcca 12389526  T
Q  199 cccttttatattcatattatcctttgtgaaatcactttgagcctccaga-taaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatc 297  Q
    || | |||||||| ||| ||||||||||||| |||||||||||||||||  ||||||||||||||  ||| ||||||| | |     ||||||||| |      
T  12389525 ccttgttatattcttatcatcctttgtgaaaccactttgagcctccagacaaaaaatttctttct--tta-ttagtgacgaa-----tcatgtcactaaa 12389434  T
Q  298 ctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    ||  |||||||||||||||| |||||||||||||||||| ||||| |||||    
T  12389433 ctacactttaaatgcaccctgtttgatttcacttggagtcagatatatatt 12389383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 154 - 287
Target Start/End: Complemental strand, 5107840 - 5107707
Alignment:
Q  154 tacacacgacacatttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaa 253  Q
    |||||||||  |||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| ||| | || ||||    
T  5107840 tacacacgaggcatttttctttgatgccttgagcctttctagccacccttttatattcttattatcctttgtgaaatcaatttgagtctctacatgaaaa 5107741  T
Q  254 tttctttcttgttacttagtgaaggatcatgtca 287  Q
    |||||||  ||||||||||||| | |||||||||    
T  5107740 tttcttttctgttacttagtgacgaatcatgtca 5107707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 20578559 - 20578398
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtaccttgag 186  Q
    ||||||||||||||||| ||||| |||||| || |||||| |||||||| |   ||||| ||||| |||||| ||  || ||||||||||||||||||||    
T  20578559 tccatatgaatgttattattgcttgaatttccgcccgttcgttacggacaaacagttaggttatattacacatgagtcaatttttctttggtaccttgag 20578460  T
Q  187 cctttcaagccaccct-tttatattcatattatcctttgtgaaatcactttgagcctccaga 247  Q
    |||||||||||||| | ||||||||| |||||| |||||||||| |||||||||||||||||    
T  20578459 cctttcaagccaccatgtttatattcttattatactttgtgaaaccactttgagcctccaga 20578398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 4985823 - 4986000
Alignment:
Q  166 atttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgt 265  Q
    |||||| |||||||||||||| | || || |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||  ||| |||  || ||||    
T  4985823 atttttatttggtaccttgagtcatttaaaccacccttttatattcttattatcctttgtgaaaccactttgaaccttcagacgaaatttttatttttgt 4985922  T
Q  266 tacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    |||||||||| | |     |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |||| ||||    
T  4985923 tacttagtgatgaa-----tcatgtcacagtcctgaactttaaatgcatcctatatgatttcactttgagttatataggtatt 4986000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 4989921 - 4990098
Alignment:
Q  166 atttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgt 265  Q
    |||||| |||||||||||||| | || || |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||  ||| |||  || ||||    
T  4989921 atttttatttggtaccttgagtcatttaaaccacccttttatattcttattatcctttgtgaaaccactttgaaccttcagacgaaatttttatttttgt 4990020  T
Q  266 tacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    |||||||||| | |     |||||||||| |||||||||||||||||| ||||| ||||||||||| |||||| |||| ||||    
T  4990021 tacttagtgatgaa-----tcatgtcacagtcctgaactttaaatgcatcctatatgatttcactttgagttatataggtatt 4990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 39269245 - 39269405
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttcttt 175  Q
    |||| ||||| |||||||||||  |||||||||| |||||||| || |||||||||||| ||| |||||| |||| ||||||| || || ||||||| ||    
T  39269245 attacgagtgttccatatgaatactatttttgcttgaatttgcagctgttctttacggatgatcggttaggttattatacacaggagacaatttttcatt 39269344  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttga 238  Q
    |||||||||||||||||||| || |||||  ||||| ||||||||||||||||| || |||||    
T  39269345 ggtaccttgagcctttcaagacaaccttt--tattcttattatcctttgtgaaaccaatttga 39269405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 19155469 - 19155601
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca---tttttctttggtaccttgag 186  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||| |||||| || |||   ||||||||| |||| |||      
T  19155469 catatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaatttttttctttagtacattggt 19155568  T
Q  187 cctttcaagccacccttttatattcatattatc 219  Q
    ||||| |||||| |||||||||||| |||||||    
T  19155569 cctttaaagccatccttttatattcttattatc 19155601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 20754868 - 20755000
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca---tttttctttggtaccttgag 186  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||| |||||| || |||   ||||||||| |||| |||      
T  20754868 catatgaatgttatttttgctcgaatttgcggtcgttctttacggacgatcggttaagttatattacacatgagacaatttttttctttagtacattggt 20754967  T
Q  187 cctttcaagccacccttttatattcatattatc 219  Q
    ||||| |||||| |||||||||||| |||||||    
T  20754968 cctttaaagccatccttttatattcttattatc 20755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 13251679 - 13251730
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||||||||||||||||||||||||||| ||||| || | |||||||    
T  13251679 agcataacctgtgagatttagagccaaatatttccatattcattataggttg 13251730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 20578626 - 20578587
Alignment:
Q  18 gtgagatttagagccaaatattttcatatccactctaggt 57  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  20578626 gtgagattcagagccaaatattttcatatccattctaggt 20578587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 19202634 - 19202588
Alignment:
Q  13 aacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||||||| |||||||||||||| |||||||| |||||||||    
T  19202634 aaccggtgagattcagagccaaatatttccatatccattctaggttg 19202588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 21320728 - 21320398
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttgctt----cataaattttttccattaggagtgctccatatgaatgttat 103  Q
    |||| |||| |||||||| ||||| |||||||| |||||||| ||||| ||| |     ||||||| ||| | |||| ||||| |||||||||||| |||    
T  21320728 agcataaccggtgagattcagagcgaaatatttccatatccattctagtttgttagatacataaatatttccaattatgagtgttccatatgaatgctat 21320629  T
Q  104 ttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttctttggtaccttgagcctttcaagccaccct 202  Q
    ||||||| ||||||| || ||||||||||||| ||| |||||| |||| ||||| |||| || |||||||||||||||||||||||||||| |||||||     
T  21320628 ttttgcttgaatttgaggtcgttctttacggatgatcggttaggttattatacatacgagacaatttttctttggtaccttgagcctttcaggccaccc- 21320530  T
Q  203 tttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaa 302  Q
     |||||||| | ||||||||||||||| ||||| |||||||| ||| ||||||||||||||||   ||||||| |||     |||||||||| ||||  |    
T  21320529 attatattcttcttatcctttgtgaaaccacttcgagcctcctgatgaaaatttctttcttgt---ttagtgacgga-----tcatgtcacagtcctaca 21320438  T
Q  303 ctttaaatgcaccctatttgatttcacttggagttagata 342  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  21320437 ctttaaatgcaccctatctgatttcacttggagttagata 21320398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 77 - 343
Target Start/End: Complemental strand, 18571616 - 18571358
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttg 176  Q
    |||| ||||| |||||||||| | ||||||| || ||||||||||| |||||||| ||||||| | |||| ||||| |||||| ||  || |||||||||    
T  18571616 attatgagtgttccatatgaacgctattttttcttgaatttgcggctgttctttatggacgatcgattaggttatattacacatgaggcaattttctttg 18571517  T
Q  177 gtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaa 276  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||||||||  | |||||||||||| | |||||||||||  || ||  |||||||     
T  18571516 gtacctagagcctttcaagccaccctgttatattcttattatcctttgtgaaactattttgagcctccaaacaaaaatttctt--ttctttattagtga- 18571420  T
Q  277 ggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatag 343  Q
        ||  |||||| ||| ||||| || ||| ||| |||||||||||||||||||||||||||||||    
T  18571419 ----caaatcatgtgacagtcctgcac-ttacatgaaccctatttgatttcacttggagttagatag 18571358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 29761764 - 29762082
Alignment:
Q  19 tgagatttagagccaaatattttcatatccactctaggttgcttcata----aattttttccattaggagtgctccatatgaatgttatttttgctcgaa 114  Q
    ||||||| ||||||||||| || |||||||| ||||||||| |  |||    ||| ||| | |||| ||||| |||||||||||||||||||| || |||    
T  29761764 tgagattcagagccaaatagttccatatccattctaggttgttagatacttaaatatttccaattatgagtgttccatatgaatgttatttttacttgaa 29761863  T
Q  115 tttgcggccgttctttacggacgattggttagattataatacacacgacacatttttct-ttggtaccttgagcctttcaagccacccttttatattcat 213  Q
    |||||||  ||||||||| ||||||  ||||| ||||| ||||||||| |||        |||||||||||||||||||||||||||||||||||||| |    
T  29761864 tttgcggttgttctttacagacgatcagttaggttatattacacacgagacaaaaaaaaattggtaccttgagcctttcaagccacccttttatattctt 29761963  T
Q  214 attatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgca 313  Q
    ||| ||||||||||||  ||||| ||||||| ||| ||||||||||||||     ||||||| | |     |||||||||| ||||  ||||||||||||    
T  29761964 attttcctttgtgaaaatactttaagcctcctgat-aaaatttctttctt----tttagtgacgaa-----tcatgtcacagtcctacactttaaatgca 29762053  T
Q  314 ccctatttgatttcacttggagttagata 342  Q
    || | ||||||| ||||||||||||||||    
T  29762054 ccttgtttgattccacttggagttagata 29762082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 260
Target Start/End: Original strand, 24721340 - 24721507
Alignment:
Q  91 atatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctt 190  Q
    ||||||||| || ||||||| ||||| ||| |||||||||||||||||| |||||| |||| ||||||||||  || |||||||||||||||    ||||    
T  24721340 atatgaatgctacttttgcttgaattagcgaccgttctttacggacgatcggttaggttattatacacacgaggcaattttctttggtacct----cctt 24721435  T
Q  191 tcaagccaccctttt--atattcatattatcctttgtgaaatcactttgagcctccagataaaaatttcttt 260  Q
    |||||||||||||||  |||||| ||||||||||||||||| || ||||||||||||||| |||| ||||||    
T  24721436 tcaagccaccctttttaatattcttattatcctttgtgaaaccaatttgagcctccagatgaaaaattcttt 24721507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 77 - 348
Target Start/End: Original strand, 17099185 - 17099450
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttcttt 175  Q
    |||| ||||| || ||||||||| |||||||||| ||||||| |||||||||||| ||||||| |||||  |||| | ||||||||  || ||||| |||    
T  17099185 attatgagtgttcgatatgaatgctatttttgcttgaatttgtggccgttctttatggacgatcggttaagttattacacacacgaggcaatttttattt 17099284  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccaga--taaaaatttctttcttgttacttagt 273  Q
    ||||||| |||| ||||||||| |||| |||||||| ||||||||||||||||| ||||||||| |||||||   |||||||  |||||  ||| |||||    
T  17099285 ggtacctagagc-tttcaagccgccctgttatattcttattatcctttgtgaaaccactttgaggctccagacgaaaaaattattttct--tta-ttagt 17099380  T
Q  274 gaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    || | |     |||||||||  ||||  | |||||||||||||| ||||||||||||||||||||||||| ||||    
T  17099381 gacgaa-----tcatgtcacggtcctacaatttaaatgcaccctttttgatttcacttggagttagataggtatt 17099450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 17511995 - 17511824
Alignment:
Q  95 gaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaa 194  Q
    |||||||||||||| | ||||||| || | |||||||||||||||  ||||| |||| ||||||||||  || |||||||||||| | ||||||||||||    
T  17511995 gaatgttatttttgtttgaatttgtggtcattctttacggacgatcagttaggttattatacacacgaggcaattttctttggtatcctgagcctttcaa 17511896  T
Q  195 gccacccttt---tatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttctt 263  Q
    ||||||||||   ||||||| ||| ||||||||||||| || |||||||||||| || | ||||| ||||||    
T  17511895 gccaccctttttatatattcttataatcctttgtgaaaccattttgagcctccaaatgataatttttttctt 17511824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 260
Target Start/End: Original strand, 26828751 - 26828936
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgc-tcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttct-t 174  Q
    |||| ||||| ||||| |||||||||||||| | | |||||| ||| |||||||||| |||||| |||||| |||| ||||| ||||  || |||| | |    
T  26828751 attatgagtgttccatgtgaatgttattttttccttgaattttcggacgttctttacagacgatcggttaggttattatacatacgaggcaattttttct 26828850  T
Q  175 tggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttcttt 260  Q
    |||||||| |||||||| |||||||||| |||||||| ||||||||||| ||||| || ||||||||||||||  ||| |||||||    
T  26828851 tggtacctagagcctttgaagccaccctattatattcttattatcctttatgaaaccaatttgagcctccagacgaaattttcttt 26828936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 348
Target Start/End: Complemental strand, 25231694 - 25231518
Alignment:
Q  166 atttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagat-aaaaatttctttcttg 264  Q
    |||||| |||||||||| ||| ||||||| ||||||| |||||||| ||||||||||||||||| |||||||||  |||| |  ||||||||||||  |     
T  25231694 atttttatttggtacctagagtctttcaacccaccctattatattcttattatcctttgtgaaaccactttgagtttccaaacgaaaaatttcttt--tc 25231597  T
Q  265 ttacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    ||  ||||||| | |||||||||     |||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  25231596 tttattagtgacgaatcatgtca-----caatcctacactttaaatgcaccctatttgatttcacttggatttagataggtatt 25231518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 17964242 - 17964085
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca--tttttctttggta 179  Q
    ||||| ||||||| |||||||||||||||| ||||||||| | |||||||||  | ||  || |  ||||| |||||||||   |  |||||||||||||    
T  17964242 gagtggtccatataaatgttatttttgctcaaatttgcggtcattctttacgaccaatcagtcatgttatattacacacgaggaaattttttctttggta 17964143  T
Q  180 ccttgagcctttcaagccacccttt--tatattcatattatcctttgtgaaatcactt 235  Q
    ||||||||||||||||||| |||||  ||||||  ||||||||||| ||||| |||||    
T  17964142 ccttgagcctttcaagccatccttttatatatttttattatcctttatgaaaccactt 17964085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 15175547 - 15175682
Alignment:
Q  205 tatattcatattatcctttgtgaaatcactttgagcctccagat-aaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaac 303  Q
    ||||||| ||||||||||||||||| || ||||||||||||||| |||||||| |||||| |   ||||||| | |     | |||||||| ||||| ||    
T  15175547 tatattcttattatcctttgtgaaaccattttgagcctccagatgaaaaatttatttctttt---ttagtgacgaa-----ttatgtcacagtcctgcac 15175638  T
Q  304 tttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
      || ||| ||||||||||||||||||||||||||||||| ||||    
T  15175639 -gtacatgaaccctatttgatttcacttggagttagataggtatt 15175682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 21230208 - 21230360
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcct 189  Q
    |||||||||| ||||||| | ||||||| |||   |||||||||||||||   | |  ||||| |||||||||  || ||||  |||||||||||||| |    
T  21230208 catatgaatgctattttttcacgaattttcggttattctttacggacgatcaatcatgttatattacacacgaggcaatttt--ttggtaccttgagcat 21230305  T
Q  190 ttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    |||||||||  | ||||||||  |||||||| |||||||| || || |||||||||    
T  21230306 ttcaagcca-tcgtttatatttgtattatccgttgtgaaaccaattggagcctcca 21230360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 28857689 - 28857641
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttcttt 130  Q
    ||||| ||||| |||||||||||||| ||||||||||||| ||||||||    
T  28857689 gagtgttccatctgaatgttattttttctcgaatttgcggtcgttcttt 28857641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 24721248 - 24721299
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| |||||||||||||| |||||||| |||||||||    
T  24721248 agcataaccggtgagattcagagccaaatatttccatatccattctaggttg 24721299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 18571685 - 18571644
Alignment:
Q  18 gtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  18571685 gtgagattcagagccaaatatttccatatccattctaggttg 18571644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 22571028 - 22570708
Alignment:
Q  18 gtgagatttagagccaaatattttcatatccactctaggttgcttcata----aattttttccattaggagtgctccatatgaatgttatttttgctcga 113  Q
    |||||||||||||||| |||||| |||||||| ||||||||| |  |||    |||  ||||||||| ||||| |||||||||||| ||||||  || ||    
T  22571028 gtgagatttagagccatatatttccatatccattctaggttgttagatacttaaatactttccattatgagtgttccatatgaatgctattttacctgga 22570929  T
Q  114 atttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaagccacccttttatattcat 213  Q
    |||||||||| ||||||||| ||||| || || ||||||||||||||    ||||||||||||||||||||||||||| ||||||||||||  ||||| |    
T  22570928 atttgcggccattctttacgaacgatcgggtatattataatacacacattgcatttttctttggtaccttgagccttttaagccacccttt--tattctt 22570831  T
Q  214 attatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgca 313  Q
    |||||||||||||||| ||||||| ||||||||||  |||||||| ||||| |||| |||||     ||  |||||||||| |||||||| ||||| |||    
T  22570830 attatcctttgtgaaaccactttgtgcctccagat-gaaatttctctcttgatactaagtga-----caaatcatgtcacagtcctgaaccttaaaagca 22570737  T
Q  314 ccctatttgatttcacttggagttagata 342  Q
     | | ||||||||| ||||||||||||||    
T  22570736 gcatgtttgatttctcttggagttagata 22570708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 94 - 342
Target Start/End: Original strand, 11176602 - 11176847
Alignment:
Q  94 tgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttt--tctttggtaccttgagccttt 191  Q
    |||||| ||||||| ||||||||||| | |||||||||||||||||  |||| | ||||||| |||  | |||||||  |||||||||||||||  ||||    
T  11176602 tgaatgctattttttctcgaatttgctgtcgttctttacggacgatcagttaaaatataataaacataagacatttttttctttggtaccttgatacttt 11176701  T
Q  192 caagccaccc-ttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgt 290  Q
    |||||||||| |||||||||| ||||||||||| ||||| |||||||||||| |||| | | ||||||||||| ||||| ||||| | |     ||||||    
T  11176702 caagccaccctttttatattcttattatcctttttgaaaccactttgagccttcaga-agatatttctttcttattactaagtgacgaa-----tcatgt 11176795  T
Q  291 cacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    |||| ||||||||||||||  |||| | ||||||||| ||||||||||||||    
T  11176796 cacagtcctgaactttaaaatcaccttgtttgatttctcttggagttagata 11176847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 77 - 248
Target Start/End: Original strand, 21844704 - 21844877
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttg 176  Q
    |||| ||||| |||||||||||| |||||||||| ||||||  |||||||||||||||||||| | |||| |||| ||||||||||  || |||  ||||    
T  21844704 attatgagtgttccatatgaatgctatttttgcttgaatttatggccgttctttacggacgatcgattaggttattatacacacgaggcaatttcttttg 21844803  T
Q  177 gtaccttgagcctttcaagccaccctttt--atattcatattatcctttgtgaaatcactttgagcctccagat 248  Q
    ||| |||||||||||||||||||||||||  |||||| |||||||| |||| ||| || |||||||||||||||    
T  21844804 gtatcttgagcctttcaagccaccctttttaatattcttattatccattgtaaaaccattttgagcctccagat 21844877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 90 - 346
Target Start/End: Original strand, 22525676 - 22525928
Alignment:
Q  90 catatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca--tttttctttggtaccttgagc 187  Q
    |||||| ||| |||| | ||||| ||||||||||||||||||  || |||||||||  ||||| |||||||||  ||  |||||||||||||||||||||    
T  22525676 catatggatgctattctagctcgcatttgcggccgttctttatagatgattggttaatttatattacacacgaggcaattttttctttggtaccttgagc 22525775  T
Q  188 ctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttc-tttcttgttacttagtgaaggatcatgtc 286  Q
     |||||| ||||||||  |||||| |||| |||||||||||| ||||||||||||||||||  ||||||| ||| |||||||| |||||     ||  |     
T  22525776 atttcaaaccaccctt--atattcttattttcctttgtgaaaccactttgagcctccagatgcaaatttcttttgttgttactaagtga-----caaata 22525868  T
Q  287 atgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagata 346  Q
      |||||| |||||||| |||||||||  |||||||||||| ||||||||||| ||||||    
T  22525869 gagtcacagtcctgaaccttaaatgcaatctatttgatttctcttggagttaggtagata 22525928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 9870260 - 9870384
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttg 176  Q
    |||| ||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||| || | |||||||| |   | |||||||||    
T  9870260 attatgagtgttccatatgaatgctatttttgctcgaatttgcgtccgttctttacagacgatcggttaggttgttatacacacaaggaaattttctttg 9870359  T
Q  177 gtaccttgagcctttcaagccaccc 201  Q
    |||||||||||||||||||||||||    
T  9870360 gtaccttgagcctttcaagccaccc 9870384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 23843712 - 23843872
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtaccttgag 186  Q
    |||||||||||| || ||||||| ||||||||||  |||||||||  ||||| |||||| ||||| |||| ||||  || |||||||||  ||||| |||    
T  23843712 tccatatgaatgctacttttgcttgaatttgcggttgttctttacaaacgatcggttaggttatattacatacgaggcaatttttctttcatacctagag 23843811  T
Q  187 cctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccaga 247  Q
     ||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||    
T  23843812 tctttcaagccaccctattatattcttattatcctttgtgaaaccactttgaacctccaga 23843872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 287
Target Start/End: Original strand, 28588122 - 28588325
Alignment:
Q  83 agtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtacct 182  Q
    |||| |||| ||||||| ||||||||||| ||||||  | ||||||||| ||||  | ||| |  ||||| ||||||||| |||      ||||||||||    
T  28588122 agtggtccacatgaatgctatttttgctcaaatttgatgtcgttctttatggacagtcggtcatgttatactacacacgagacaaaaaaatttggtacct 28588221  T
Q  183 tgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaattt-ctttcttgttacttagtgaaggatc 281  Q
    ||||||| ||||||| |||||| |||||| ||||||||||||||| | |||||||||||| || | || ||||| |||| |||||||| ||||| | |||    
T  28588222 tgagcctctcaagccgcccttt-atattcttattatcctttgtgataccactttgagcctaca-acaataatttactttgttgttactaagtgacgaatc 28588319  T
Q  282 atgtca 287  Q
    ||||||    
T  28588320 atgtca 28588325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 9870181 - 9870232
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| | ||||||||||||||||||||| |||||||||    
T  9870181 agcataaccggtgagattcatagccaaatattttcatatccattctaggttg 9870232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 21844633 - 21844674
Alignment:
Q  18 gtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  21844633 gtgagattcagagccaaatatttccatatccattctaggttg 21844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 13130780 - 13131033
Alignment:
Q  13 aacctgtgagatttagagccaaatattttcatatccactctaggttgcttcata----aattttttccattaggagtgctccatatgaatgttatttttg 108  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |  |||    ||| ||||| |||| | ||| |||| ||||||| ||||||||    
T  13130780 aaccggtgagatttagagcccaatatttccatatccattctaggttgttagatacttaaatattttcaattatgtgtgttccaaatgaatgctatttttg 13130879  T
Q  109 ctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttctttggtaccttgagcctttcaagccacccttttat 207  Q
    || |||||||||||||||||||||||||||| |||||| ||||| ||||||||   | ||||||||||||||||||||||||||||||||||||  ||||    
T  13130880 cttgaatttgcggccgttctttacggacgatcggttaggttatattacacacgtggcaatttttctttggtaccttgagcctttcaagccaccc--ttat 13130977  T
Q  208 attcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttctt 263  Q
    |||| ||| ||| ||||||||| |||||||||||||||||| | ||||||||||||    
T  13130978 attcttatcatcttttgtgaaaccactttgagcctccagatgataatttctttctt 13131033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 12609043 - 12608896
Alignment:
Q  65 taaattttttccattaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgaca 164  Q
    ||||| ||||| |||| ||||| |||||||||||| |||||||||| ||||||||| | ||||||||||||||||   |||| ||||| ||||||||| |    
T  12609043 taaatattttcaattatgagtgttccatatgaatgctatttttgcttgaatttgcgacagttctttacggacgatcaattaggttatattacacacgaga 12608944  T
Q  165 c-atttttctttggtaccttgagcctttcaagccacccttttatattc 211  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  12608943 caatttttctttggtaccttgagcctttcaagccacccttttatattc 12608896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 77 - 343
Target Start/End: Complemental strand, 25097423 - 25097169
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttcttt 175  Q
    |||| ||||| ||||||||||||||||||||||| ||| || ||| ||||||||||||||||| | |||| ||||| |||||||||  | ||||||||||    
T  25097423 attatgagtgttccatatgaatgttatttttgcttgaacttacggtcgttctttacggacgatcgattaggttatattacacacgagtcaatttttcttt 25097324  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
    ||||||| ||||||||||||||||||| ||      |||||||||||||||||| || ||| |||||||| |  ||| |||| ||||  ||| |||||||    
T  25097323 ggtacctagagcctttcaagccaccctatt------atattatcctttgtgaaaccaatttaagcctccatacgaaattttc-ttctcttta-ttagtga 25097232  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatag 343  Q
     | |     |||||||||| ||||| |||||| | | ||||| |||||||||||| ||||||||||||    
T  25097231 cgaa-----tcatgtcacagtcctgcactttacacgaaccctgtttgatttcactcggagttagatag 25097169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 342
Target Start/End: Complemental strand, 17109717 - 17109568
Alignment:
Q  185 agcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatg 284  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||| ||||||||||  ||| ||||||| | |         
T  17109717 agcctttcaagccaccctgttatattcttattatcctttgtgaaaccactttgaacctccagacaaatatttctttct--tta-ttagtgatgaa----- 17109626  T
Q  285 tcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    |||||||||||||||  |||||||||||||| | ||||||||||||||||||||||||    
T  17109625 tcatgtcacaatcctacactttaaatgcaccttgtttgatttcacttggagttagata 17109568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 9055109 - 9054912
Alignment:
Q  91 atatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacac--gacacatttttctttggtaccttgagcc 188  Q
    ||||| ||| |||||||||||||| |||||  |||||||||||||| || ||| |  ||||| | |||||  | ||  |||||||||||||| |||||||    
T  9055109 atatggatgatatttttgctcgaacttgcgatcgttctttacggacaatcggtcatgttatattccacacttgtcaattttttctttggtacattgagcc 9055010  T
Q  189 tttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttc-tttcttgttacttagtgaaggatcatgtca 287  Q
    |||||||||| |||||||||||| | ||||||||||||||| |  |||||||||||| | || |||||| ||| |||||||| ||||| | |||||||||    
T  9055009 tttcaagcca-ccttttatattcttgttatcctttgtgaaacccttttgagcctcca-acaataatttcttttgttgttactaagtgatgaatcatgtca 9054912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 17110078 - 17109968
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacac-atttttctttggtaccttgag 186  Q
    |||||||||||| |||||||||| |||||||  | ||||||||||||| ||| |||||| ||||| ||||||||| || | ||||||||||||||| |||    
T  17110078 tccatatgaatgctatttttgcttgaatttgttgtcgttctttacggatgatcggttaggttatattacacacgagacaacttttctttggtacctagag 17109979  T
Q  187 cctttcaagcc 197  Q
    |||||||||||    
T  17109978 cctttcaagcc 17109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 11783266 - 11783203
Alignment:
Q  285 tcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    |||||||||| ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||    
T  11783266 tcatgtcacagtcctgaactttaaatgcactcagtttgatttcacttggagttagataggtatt 11783203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 12608877 - 12608839
Alignment:
Q  172 ctttggtaccttgagcctttcaagccacccttttatatt 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12608877 ctttggtaccttgagcctttcaagccacccttttatatt 12608839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 12608797 - 12608744
Alignment:
Q  289 gtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagata 342  Q
    |||||| ||||||||||| |||||||| | |||||||||||||| |||||||||    
T  12608797 gtcacagtcctgaacttttaatgcaccatgtttgatttcacttgaagttagata 12608744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 11933979 - 11933928
Alignment:
Q  65 taaattttttccattaggagtgctccatatgaatgttatttttgctcgaatt 116  Q
    ||||| ||||| |||| ||||| ||||||||||||||||||||||| |||||    
T  11933979 taaatattttcaattatgagtgttccatatgaatgttatttttgcttgaatt 11933928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 12770153 - 12770489
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggtt----gcttcataaattttttccattaggagtgctccatatgaatgttat 103  Q
    |||| |||| |||||||| |||||||||||||| |||||||| ||||||||    | | | ||||| |||   |||| ||||| |||||||||||| |||    
T  12770153 agcataaccggtgagattcagagccaaatatttccatatccattctaggttcttagatacttaaatatttctaattatgagtgttccatatgaatgctat 12770252  T
Q  104 ttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaagccaccctt 203  Q
    || || | |||||||||| |||||||||||||| || |||||| |||| |||||||| | |||||||||||| |||||||||||||| |||||||| | |    
T  12770253 ttctgtttgaatttgcggtcgttctttacggacaatcggttaggttattatacacacaagacatttttctttagtaccttgagccttccaagccacac-t 12770351  T
Q  204 ttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggatcatgtcatgtcacaatcctgaac 303  Q
    |||| ||| ||||||||||| ||||| ||||||||| ||| |||  |||||||||||| | ||||||||||| | |     || ||||||| ||||||||    
T  12770352 ttattttcttattatcctttctgaaaccactttgag-ctctagacgaaaatttctttcat-ttacttagtgacgaa-----tcgtgtcacagtcctgaac 12770444  T
Q  304 tttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
    ||| |||||||||| ||||||||||||||||| ||||||| ||||    
T  12770445 tttcaatgcaccctgtttgatttcacttggagatagataggtatt 12770489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 82 - 348
Target Start/End: Original strand, 34275488 - 34275748
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtacc 181  Q
    ||||| |||||||||||| |||||||||| |||||||||| | ||||||||||||||||| |||| |||| ||||||||   ||| |||| ||||| |||    
T  34275488 gagtgttccatatgaatgctatttttgcttgaatttgcggtcattctttacggacgattgattaggttattatacacacatgacaatttt-tttgggacc 34275586  T
Q  182 ttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccaga-taaaaatttctttcttgttacttagtgaaggat 280  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  |||| |||||||||  ||| ||||||| | |     
T  34275587 ttgaacctttcaagccacccttttatattcttattatcctttgtgaaaccactttgagcctccagacgaaaattttctttct--tta-ttagtgacgaa- 34275682  T
Q  281 catgtcatgtcacaatc--ctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
        |||||||||| ||  ||  ||||||||||||| || || |||||||||||||||||||||| ||||    
T  34275683 ----tcatgtcacagtcctctacactttaaatgcactctgttcgatttcacttggagttagataggtatt 34275748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 91 - 349
Target Start/End: Complemental strand, 8766753 - 8766501
Alignment:
Q  91 atatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctt 190  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||  ||||| |||| ||||||||||  || |||| ||||||||||||||||||    
T  8766753 atatgaatgttatttttgcttgaatttgcgtccgttctttacagacgatcagttaggttattatacacacgaggcaattttgtttggtaccttgagcctt 8766654  T
Q  191 tcaagccaccctttt--atattcatattatcctttgtgaaatcactttgagcctccagat-aaaaatttctttcttgttacttagtgaaggatcatgtca 287  Q
    |||||||| ||||||  |||||| |||||||||||| |||| || |||||||||||| || |||||||  |||||  ||| ||||||| | |||||||||    
T  8766653 tcaagccatcctttttaatattcttattatcctttgcgaaaccattttgagcctccaaatgaaaaattattttct--tta-ttagtgacgaatcatgtca 8766557  T
Q  288 tgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatattt 349  Q
     | |     |||| | |||| ||| ||||| ||||||||||||||||||||||||| |||||    
T  8766556 cggc-----cctgca-tttacatgaaccctgtttgatttcacttggagttagataggtattt 8766501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 13586665 - 13586496
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagc 187  Q
    |||||||||||| |||||||||| |||||||  |||||||||||| ||||||  ||||| || | ||||||||||  || ||||||||||||||||||||    
T  13586665 tccatatgaatgctatttttgcttgaatttgtagccgttctttacagacgataagttaggttgttatacacacgaggcaattttctttggtaccttgagc 13586566  T
Q  188 ctttcaagccaccc--ttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatt 255  Q
    |||||| | |||||  |||||||||| ||||||||||||||||| || ||||||||||||||| ||||||    
T  13586565 ctttcatgacacccttttttatattcttattatcctttgtgaaaccattttgagcctccagatgaaaatt 13586496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 82 - 348
Target Start/End: Original strand, 19166330 - 19166587
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtac 180  Q
    ||||| ||||||||||   ||||||| || ||||||| || |||||||||| |||||| |||||| |||| |||||||||| ||| |||||||||| |||    
T  19166330 gagtgttccatatgaacactatttttacttgaatttgtggtcgttctttacagacgatcggttaggttattatacacacgagacaatttttctttgctac 19166429  T
Q  181 cttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtgaaggat 280  Q
    |||||| |||||||||||||||| ||||||| ||||||||  |||||||  |||||||||||||||||  ||||||||||||  ||| ||| ||| | |     
T  19166430 cttgagtctttcaagccacccttatatattcttattatcc-ctgtgaaacgactttgagcctccagat-gaaatttctttct--tta-ttaatgacgaa- 19166523  T
Q  281 catgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
        |||||| ||| ||||  |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  19166524 ----tcatgtaacattcctacactttaaatgcatcctgtttgatttcacttggagttagataggtatt 19166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 83 - 263
Target Start/End: Complemental strand, 19913663 - 19913482
Alignment:
Q  83 agtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtacc 181  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||||||||||| || ||    ||  |||| ||||||||||  || |||||| ||||||||    
T  19913663 agtgttccatataaatgttatttttgcttgaatttgcggtcgttctttacgaacaatcaactaagttattatacacacgagtcaatttttcattggtacc 19913564  T
Q  182 ttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttctt 263  Q
    |||||||||||||||||||||||||||| |  ||||||||||||||||  ||||||||||||||||  ||| ||||||||||    
T  19913563 ttgagcctttcaagccacccttttatatcctgattatcctttgtgaaactactttgagcctccagacgaaattttctttctt 19913482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 8771636 - 8771465
Alignment:
Q  91 atatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctt 190  Q
    ||||||||||||||| ||||  |||||||||| ||||||||| ||||||  ||||| |||| |||| |||||  || |||| ||||||||||||||||||    
T  8771636 atatgaatgttatttctgcttcaatttgcggctgttctttacagacgatcagttaggttattatacgcacgaggcaattttgtttggtaccttgagcctt 8771537  T
Q  191 tcaagccaccctttt--atattcatattatcctttgtgaaatcactttgagcctccagataaaaatttcttt 260  Q
    |||||||| ||||||  |||||| |||||||||||| |||| || |||||||||||| || |||| ||||||    
T  8771536 tcaagccatcctttttaatattcttattatcctttgcgaaaccattttgagcctccaaatgaaaagttcttt 8771465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 269
Target Start/End: Complemental strand, 17142457 - 17142252
Alignment:
Q  65 taaattttttccattaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgaca 164  Q
    |||||| |||| | || ||||| |||||||||||| |||||||||||||||||| || | ||||||||||||||| | |||  |||  | ||| ||||      
T  17142457 taaattctttctactatgagtgttccatatgaatgctatttttgctcgaatttgtggtcattctttacggacgatcgattatgtta--acacaaacgagg 17142360  T
Q  165 cattttt-ctttggtaccttgagcctttcaagccaccctttta---tattcatattatcctttgtgaaatcactttgagcctccagataaaaatttcttt 260  Q
    ||||||| ||||||||||||||||||||||||||||| |||||   ||||  ||||||||||| ||||| |||||||||||||| || | ||||||||||    
T  17142359 cattttttctttggtaccttgagcctttcaagccaccattttatattattattattatcctttatgaaaccactttgagcctcctga-agaaatttcttt 17142261  T
Q  261 cttgttact 269  Q
    |||||||||    
T  17142260 cttgttact 17142252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 8146907 - 8146734
Alignment:
Q  92 tatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacaca-tttttctttggtaccttgagcctt 190  Q
    |||||||| |||||||||  ||||||| | || |||||||||||||||  ||||| |||| ||||||||||  || ||||||||||||| ||||||||||    
T  8146907 tatgaatgctatttttgcatgaatttgagaccattctttacggacgatcagttaggttattatacacacgaggcaatttttctttggtaacttgagcctt 8146808  T
Q  191 tcaagccaccc-ttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttctt 263  Q
    ||||||||||| |||||||||| |||||| |||||||||| || ||||| ||||||| | ||| ||| ||||||    
T  8146807 tcaagccaccctttttatattcttattattctttgtgaaaccaatttgaacctccaggtgaaattttatttctt 8146734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 343
Target Start/End: Complemental strand, 16226314 - 16226152
Alignment:
Q  177 gtaccttgagcctttcaagccaccctttt-atattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
    |||||||||||||||  ||||||| |||| |||||| ||||||||||||||||| || ||||||||||||||| ||| |||||||  |||||||||||||    
T  16226314 gtaccttgagcctttatagccaccttttttatattcctattatcctttgtgaaaccaatttgagcctccagatgaaagtttcttttctgttacttagtga 16226215  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatag 343  Q
     | |     ||||| ||||||||||||| ||| ||| ||||| ||||| ||| |||||||||||||||    
T  16226214 cgaa-----tcatgccacaatcctgaaccttatatgtaccctgtttgacttctcttggagttagatag 16226152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 8880421 - 8880567
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatt-tttcttt 175  Q
    |||| ||||| || |||||||||||||| || || |||||||||| |||| |||| ||| ||| | |||| ||||| ||||||||| ||| | |||||||    
T  8880421 attatgagtgttcaatatgaatgttattatttcttgaatttgcggtcgttttttatggatgatcgcttaggttatattacacacgagacaatatttcttt 8880520  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctt 222  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  8880521 ggtacctagagcctttcaagccaccctattatattcttattatcctt 8880567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 8878743 - 8878789
Alignment:
Q  13 aacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||    
T  8878743 aacctgtgagatttagagccaaatatttccatatccattctaggttg 8878789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 16227143 - 16227053
Alignment:
Q  88 tccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggt 178  Q
    |||||| ||||||||||| |||||||||||| ||  |||||||||| ||||| | ||| ||| |||||||||| |  ||||||||||||||    
T  16227143 tccataagaatgttatttatgctcgaatttgaggttgttctttacgaacgatcgattatattttaatacacactagtcatttttctttggt 16227053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 5633702 - 5633599
Alignment:
Q  98 tgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgacacatttttctttggtaccttgagcctttcaagcc 197  Q
    ||||| |||||||| || |||||| |||| ||||||||| |||||||  ||||| ||||||| || ||| ||   |||| |||||||||||||||| |||    
T  5633702 tgttagttttgctcaaaattgcggtcgttatttacggactattggttgtattattatacacatgagacacttgattttgataccttgagcctttcatgcc 5633603  T
Q  198 accc 201  Q
    ||||    
T  5633602 accc 5633599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 8880591 - 8880652
Alignment:
Q  285 tcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatat 347  Q
    |||||||||| ||||| | |||| ||| ||| |||||||||||||||||||||||||||||||    
T  8880591 tcatgtcacagtcctgca-tttacatgaaccttatttgatttcacttggagttagatagatat 8880652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 19913747 - 19913696
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| |||||||||||||| |||||||| |||||||||    
T  19913747 agcataaccggtgagattcagagccaaatatttccatatccattctaggttg 19913696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 34275404 - 34275455
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||| |||||||| |||||||||||||| |||||||| |||||||||    
T  34275404 agcataaccggtgagattcagagccaaatatttccatatccattctaggttg 34275455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 8766821 - 8766775
Alignment:
Q  13 aacctgtgagatttagagccaaatattttcatatccactctaggttg 59  Q
    |||| |||||||| |||||||||||||| |||||||| |||||||||    
T  8766821 aaccggtgagattcagagccaaatatttccatatccattctaggttg 8766775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 16227202 - 16227161
Alignment:
Q  8 agcagaacctgtgagatttagagccaaatattttcatatcca 49  Q
    |||| |||| ||||||||||||| ||||||||||||||||||    
T  16227202 agcataaccagtgagatttagagtcaaatattttcatatcca 16227161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 348
Target Start/End: Complemental strand, 18828477 - 18828213
Alignment:
Q  77 attaggagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggacgattggttagattataatacacacgac-acatttttcttt 175  Q
    |||| ||||| ||||||||||||||||  ||||| |||||||  | |||||| ||||||| || |||||| ||||| || |||  |  | ||||||||||    
T  18828477 attatgagtgttccatatgaatgttatcattgcttgaatttgatgtcgttctgtacggacaatcggttaggttatattagacagaaggaaatttttcttt 18828378  T
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgttacttagtga 275  Q
     |||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||  |||||  ||| |||||||    
T  18828377 tgtacctagagcctttcaagccaccctgttatattcttattatcctttgtgaaaccactttgagcctccagatgaaaattcgtttct--tta-ttagtga 18828281  T
Q  276 aggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagatatt 348  Q
     | |     |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  18828280 cgaa-----tcatgtcacaatcctacactttaaatgcaccctctttgatttcacttggagttagataggtatt 18828213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 167 - 345
Target Start/End: Complemental strand, 16115819 - 16115646
Alignment:
Q  167 tttttctttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttctttcttgtt 266  Q
    ||||||||||||||||||||| ||| ||| || |||||||||||| |||||| |||||||||| ||||||||| ||| ||||  ||  |  ||| |||||    
T  16115819 tttttctttggtaccttgagctttttaagtcatccttttatattcttattatactttgtgaaaccactttgagactctagatgcaatatcttttgttgtt 16115720  T
Q  267 acttagtgaaggatcatgtcatgtcacaatcctgaactttaaatgcaccctatttgatttcacttggagttagatagat 345  Q
    | | ||||||| |     ||||||||||| ||||||| |||||||||   | ||||||||| | |||||||||||||||    
T  16115719 attaagtgaagaa-----tcatgtcacaaccctgaaccttaaatgcaatttgtttgatttctcatggagttagatagat 16115646  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 17610397 - 17610451
Alignment:
Q  82 gagtgctccatatgaatgttatttttgctcgaatttgcggccgttctttacggac 136  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  17610397 gagtgttccatatgaatgtcatttttgctcgaatttgcggtcgttatttacggac 17610451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 17610498 - 17610568
Alignment:
Q  174 ttggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctcca 245  Q
    |||||||||| |||||||||||| || |||| |||||  ||||||| ||||||||| |||||||||||||||    
T  17610498 ttggtaccttaagcctttcaagctactcttt-atatttttattatcttttgtgaaaccactttgagcctcca 17610568  T

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Target: scaffold0072 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 39199 - 39088
Alignment:
Q  176 ggtaccttgagcctttcaagccacccttttatattcatattatcctttgtgaaatcactttgagcctccagataaaaatttc-tttcttgttacttagtg 274  Q
    ||||| |||| |||||||||| ||| | |||||||| ||||||||||||| ||| ||||||||||||||| | || |||||| ||| |||||||| ||||    
T  39199 ggtactttgaacctttcaagctaccatgttatattcttattatcctttgtaaaaccactttgagcctcca-aaaataatttcttttgttgttactaagtg 39101  T
Q  275 aaggatcatgtca 287  Q
    | | |||||||||    
T  39100 atgaatcatgtca 39088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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