View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2385_high_8 (Length: 327)

Name: NF2385_high_8
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2385_high_8
NF2385_high_8
[»] chr3 (1 HSPs)
chr3 (18-311)||(28945177-28945463)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 28945177 - 28945463
Alignment:
Q  18 ccatcataacctgcattggagaccttgtagctgaaactacagtagcatttcctttctccatcattatcactatattgtgtattgttttttgcttggtttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28945177 ccatcataacctgcattggagaccttgtagctgaaactacagtagcatttcctttctccatcattatcactatattgtgtattgttttttgcttggtttt 28945276  T
Q  118 gctaagggcaaagaagtgtgcatgtgctagagaaagtagtactgtttgagctttggagggtaaagggtatgtgaggaattaattgagtgaagttaagaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||    
T  28945277 gctaagggcaaagaagtgtgcatgtgctagagaaagtagtactgtttgagctttgg-------agggtatgtgaggaattaattgagtgaagttaaaaag 28945369  T
Q  218 agagtaaagagtagagataagttaggtatggagagatgaattagcattcaatgtcattatggcaggccacatattcccaagacaatttcataca 311  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28945370 agagtaaagagtagagataagttaggtatggagagatgaactagcatttaatgtcattatggcaggccacatattcccaagacaatttcataca 28945463  T

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