View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2385_low_10 (Length: 360)
Name: NF2385_low_10
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2385_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 354608 - 354768
Alignment:
| Q |
12 |
gtttctttgtatttgtagcatgtgagtgttccgtacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgtt |
111 |
Q |
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| T |
354608 |
gtttctttgtatttgtagcatgtgagtgttccatacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgtt |
354707 |
T |
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| Q |
112 |
aatcccttgactnnnnnnnttagacaaatacacagtttaatttggtttcgatgaagtacag |
172 |
Q |
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| T |
354708 |
aatcccttgactaaaaaaattagacaaatacacagtttaatttggtttcgatgaagtacag |
354768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 354845 - 354949
Alignment:
| Q |
249 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
348 |
Q |
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| T |
354845 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
354944 |
T |
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| Q |
349 |
ctttg |
353 |
Q |
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| T |
354945 |
ctttg |
354949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 10581244 - 10581348
Alignment:
| Q |
249 |
gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgttcctttggaaatcgatgaatcgactaaaatccgtac |
348 |
Q |
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| T |
10581244 |
gtgagtgtttgttaacttgattttttttagttttgttattttaacttagtggatgcgcaggtgttcctttggaaattgatgaatccactaaaatccatat |
10581343 |
T |
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| Q |
349 |
ctttg |
353 |
Q |
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| T |
10581344 |
ctttg |
10581348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 10581051 - 10581116
Alignment:
| Q |
58 |
attgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgttaatcccttgact |
123 |
Q |
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| T |
10581051 |
attgtaatataatgaaatgatctttcatggtgaattctgattctaacttatgttaatcccttgact |
10581116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 10580985 - 10581030
Alignment:
| Q |
12 |
gtttctttgtatttgtagcatgtgagtgttccgtacaattgttatc |
57 |
Q |
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| T |
10580985 |
gtttctgtgtatttgaaacatgtgagtgttccgtataattgttatc |
10581030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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