View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2385_low_15 (Length: 297)
Name: NF2385_low_15
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2385_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 811023 - 810763
Alignment:
| Q |
21 |
cttataacatcaactaaacaaaaatcaaagagagaagaatgacaacaagtgttgaagatctttaggttttctcaaaaacaaaaa-gatctttaggacatt |
119 |
Q |
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| T |
811023 |
cttataacatcaactaaacaaatagcaaagagagaagaatgacaa---gtattgaacaactttaggttttctcaaaaataaaaaagatctttagatcatt |
810927 |
T |
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| Q |
120 |
cgaaagtgaaacattcaatttgacaaaatcaaatgtataagagttttcttcacgaaacatacaagtgaaagaaatattacaatcctttaagacgagggat |
219 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
810926 |
cgaaagcgaaacacccaatttgacaaaatcaaatatataagagttttcttcacgaaacttacaagtgaaagaaatattacaatcctttaagaggagggat |
810827 |
T |
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| Q |
220 |
cgaatatggtctatacataataggtttttatcaattgtcgtgacatataatttatggcatgttt |
283 |
Q |
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| T |
810826 |
cgaatatggtctatacataataggtttttatcaattgtggtgacatatgatttatggcatgttt |
810763 |
T |
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