View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2385_low_18 (Length: 238)

Name: NF2385_low_18
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2385_low_18
NF2385_low_18
[»] chr8 (6 HSPs)
chr8 (1-225)||(42472790-42473013)
chr8 (1-225)||(42480036-42480271)
chr8 (5-54)||(42467475-42467524)
chr8 (116-225)||(42467568-42467677)
chr8 (1-52)||(33362311-33362362)
chr8 (131-225)||(33362135-33362229)
[»] chr2 (4 HSPs)
chr2 (113-225)||(5087224-5087336)
chr2 (1-52)||(5087402-5087453)
chr2 (111-225)||(43523864-43523978)
chr2 (1-52)||(43524041-43524092)
[»] scaffold0005 (2 HSPs)
scaffold0005 (113-225)||(40997-41109)
scaffold0005 (1-52)||(41175-41226)
[»] chr3 (6 HSPs)
chr3 (113-225)||(40924172-40924284)
chr3 (1-52)||(2735304-2735355)
chr3 (1-52)||(40924350-40924401)
chr3 (111-174)||(22511071-22511134)
chr3 (1-52)||(22510956-22511007)
chr3 (113-225)||(2735126-2735238)
[»] chr7 (4 HSPs)
chr7 (1-52)||(31420673-31420724)
chr7 (111-225)||(41595257-41595371)
chr7 (113-225)||(31420495-31420607)
chr7 (1-52)||(41595435-41595486)
[»] chr6 (3 HSPs)
chr6 (1-52)||(95976-96027)
chr6 (113-211)||(95812-95910)
chr6 (15-52)||(9303551-9303588)
[»] chr5 (6 HSPs)
chr5 (1-52)||(22271682-22271733)
chr5 (111-225)||(14008108-14008222)
chr5 (1-52)||(23122353-23122404)
chr5 (111-225)||(23122468-23122582)
chr5 (1-52)||(14008286-14008337)
chr5 (113-225)||(22271799-22271911)
[»] chr4 (2 HSPs)
chr4 (1-52)||(14798502-14798553)
chr4 (113-225)||(14798619-14798731)
[»] chr1 (2 HSPs)
chr1 (1-52)||(27132123-27132174)
chr1 (117-225)||(27129775-27129882)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42472790 - 42473013
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtatagcgtaaatttcttcctctgatggctcaaagtctttaacatgcacaata 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42472790 atacccttgaccacgaatattagaaacatcaagattgtgtcgagaaagtatagcgtaaatttcttcctctgatggctcaaagtctttaacatgcacaata 42472889  T
Q  101 tcnnnnnnnccgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaact 200  Q
    ||       ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42472890 tcaaaaaa-ccgctcttgtataaaaccatttttatcaacaaatctcaaaacaagagccatttgttccttttgtggtccatcacaaactccatcaacaact 42472988  T
Q  201 atgcaaaatttggaatcaccaattt 225  Q
    |||||||||||||||||||||||||    
T  42472989 atgcaaaatttggaatcaccaattt 42473013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42480036 - 42480271
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtatagcgtaaatttcttcct------ctgatggctcaaa------gtcttta 88  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||||||||||  ||| || |||||      | |||  ||||||      |||||||    
T  42480036 atacccttgaccacgaatgttagaaacatcaagattatgctgagaaagtatagcacaaacttgttccttaagagcggatacctcaaaattaatgtcttta 42480135  T
Q  89 acatgcacaatatcnnnnnnnccgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaact 188  Q
    ||||||||||||||       ||||||||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||  || |  ||||  | ||    
T  42480136 acatgcacaatatc-aaacaaccgctcttgtataaacccctttttatcaacaaatctcaaaacaagggccatttgttcctttcctgatttatcaagagct 42480234  T
Q  189 ccatcaacaactatgcaaaatttggaatcaccaattt 225  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42480235 ccatcaacaactatacaaaatttggaatcaccaattt 42480271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 42467475 - 42467524
Alignment:
Q  5 ccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtatagc 54  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42467475 ccttgaccacgaatgttagaaacatcaagattatgtcgagaaagtatagc 42467524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 42467568 - 42467677
Alignment:
Q  116 ttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttggaa 215  Q
    |||| ||||||||||||||| |||||||| ||||| ||||| ||| ||||| | ||||| |  ||| ||| ||||||| | ||| |||||||||||||||    
T  42467568 ttgtgtaaaaccatttttatgaacaaatctcaaaataagaggcatttgttcatattgtgatttatcccaagctccatccagaacaatgcaaaatttggaa 42467667  T
Q  216 tcaccaattt 225  Q
    ||||||||||    
T  42467668 tcaccaattt 42467677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33362362 - 33362311
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  33362362 atacccttgaccacgaatgtttgaaacatcaaggttatgtcgagaaagtata 33362311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 33362229 - 33362135
Alignment:
Q  131 tttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttggaatcaccaattt 225  Q
    |||||||||||| |  || ||||||||||| |||||||||| ||   |||||| | || ||||||| || ||||||||||| |||||||||||||    
T  33362229 tttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaatttagaatcaccaattt 33362135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 5087336 - 5087224
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  ||||||||||||||  || ||||||||||| |||||||||| ||   |||||| | || |||||||||| |||||||||||     
T  5087336 ctcttgtatcaaaccagctttatcaacaaatcttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaattta 5087237  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  5087236 gaatcaccaattt 5087224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5087453 - 5087402
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  5087453 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 5087402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 43523978 - 43523864
Alignment:
Q  111 cgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatt 210  Q
    ||||||||||| ||||||| ||||||||||||||  || ||||||||||| |||||||||||||   |||| | | || |||| ||||  || ||||| |    
T  43523978 cgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaact 43523879  T
Q  211 tggaatcaccaattt 225  Q
    |||||||||||||||    
T  43523878 tggaatcaccaattt 43523864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43524092 - 43524041
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  43524092 atacccttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtata 43524041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 41109 - 40997
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||||||||| ||   |||||||| || ||||||| || |||||||||||     
T  41109 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacaagcttcatcaacgacgatgcaaaattta 41010  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  41009 gaatcaccaattt 40997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41226 - 41175
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  41226 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 41175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 40924284 - 40924172
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||||||||| ||   |||||||| || ||||||| || |||||||||||     
T  40924284 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacaagcttcatcaacgacgatgcaaaattta 40924185  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  40924184 gaatcaccaattt 40924172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2735355 - 2735304
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  2735355 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 2735304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40924401 - 40924350
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  40924401 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 40924350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 22511071 - 22511134
Alignment:
Q  111 cgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtg 174  Q
    ||||||||||| ||||||| ||||||||||||||  || ||||||||||| |||||||||||||    
T  22511071 cgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtg 22511134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22510956 - 22511007
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||| ||| ||||||||||||||| || |||||||||||||||    
T  22510956 atacccttgaccatgaaggttagaaacatcaaggttatgtcgagaaagtata 22511007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 2735238 - 2735126
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||| ||||| ||   |||||| | || ||||||| || || ||||||||     
T  2735238 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgtttcttttttgactcatcacgagcttcatcaacgacgatacaaaattta 2735139  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  2735138 gaatcaccaattt 2735126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31420724 - 31420673
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  31420724 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 31420673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 41595371 - 41595257
Alignment:
Q  111 cgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatt 210  Q
    ||||||||||| ||||||| ||||||||||||||  || ||||||||||| |||||||||||||   |||| | | || |||| ||||  || ||||| |    
T  41595371 cgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaact 41595272  T
Q  211 tggaatcaccaattt 225  Q
    |||||||||||||||    
T  41595271 tggaatcaccaattt 41595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 31420607 - 31420495
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||||||||| ||   |||||| | || ||||||| || |||||||||||     
T  31420607 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaattta 31420508  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  31420507 gaatcaccaattt 31420495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41595486 - 41595435
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  41595486 atacccttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtata 41595435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 96027 - 95976
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  96027 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 95976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 95910 - 95812
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaattt 211  Q
    |||||| || ||||||  ||||||||||||||  || |||| |||||| |||||||||| ||   |||||| | || |||||||||| |||||||||||    
T  95910 ctcttgcatcaaaccagctttatcaacaaatcttaacacaatagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaattt 95812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 9303588 - 9303551
Alignment:
Q  15 gaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||| || |||||||||||||||    
T  9303588 gaatgttagaaacatcaaggttatgtcgagaaagtata 9303551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22271682 - 22271733
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  22271682 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 22271733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 14008222 - 14008108
Alignment:
Q  111 cgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatt 210  Q
    ||||||||||| ||||||| ||||||||||||||  || ||||||||||| |||||||||||||   |||| | | || |||| ||||  || ||||| |    
T  14008222 cgctcttgtattaaaccatctttatcaacaaatcttaacacaagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaact 14008123  T
Q  211 tggaatcaccaattt 225  Q
    |||||||||||||||    
T  14008122 tggaatcaccaattt 14008108  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23122353 - 23122404
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  23122353 atacccttgaccacgaaggttagaaacatcaaggttatgtcgagaaagtata 23122404  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 23122468 - 23122582
Alignment:
Q  111 cgctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatt 210  Q
    ||||||||||| ||||||| ||||||||||||||  || || |||||||| |||||||||||||   |||| | | || |||| ||||  || ||||| |    
T  23122468 cgctcttgtattaaaccatctttatcaacaaatcttaacaccagagccatttgttccttttgtgactcatcgcgagcttcatctacaatgatacaaaact 23122567  T
Q  211 tggaatcaccaattt 225  Q
    |||||||||||||||    
T  23122568 tggaatcaccaattt 23122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14008337 - 14008286
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  14008337 ataccattgaccacgaaggttagaaacatcaaggttatgtcgagaaagtata 14008286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 22271799 - 22271911
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||||||||| ||   |||||| | || ||||||| |  || ||||||||     
T  22271799 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgatgatacaaaattta 22271898  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  22271899 gaatcaccaattt 22271911  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14798502 - 14798553
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  14798502 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 14798553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 14798619 - 14798731
Alignment:
Q  113 ctcttgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttg 212  Q
    ||||||||| ||||||  |||||||||||| |  || ||||||||||| |||||||||| ||   |||||| | || ||||||| || |||||||||||     
T  14798619 ctcttgtatcaaaccagctttatcaacaaaccttaacacaagagccatttgttccttttttgactcatcacgagcttcatcaacgacgatgcaaaattta 14798718  T
Q  213 gaatcaccaattt 225  Q
    |||||||||||||    
T  14798719 gaatcaccaattt 14798731  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27132174 - 27132123
Alignment:
Q  1 atacccttgaccacgaatgttagaaacatcaagattgtgtcgagaaagtata 52  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27132174 atacccttgaccacgaatgttagaaacatcaaggttatgtcgagaaagtata 27132123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 27129882 - 27129775
Alignment:
Q  117 tgtataaaaccatttttatcaacaaatcccaaaacaagagccatgtgttccttttgtggtccatcacaaactccatcaacaactatgcaaaatttggaat 216  Q
    ||||| ||||||  |||||||||||| || || ||| ||||||| |||||||||| ||   |||||| | || |||||||||| ||||||||||| ||||    
T  27129882 tgtatcaaaccagctttatcaacaaa-cctaacacaggagccatttgttccttttttgactcatcacgagcttcatcaacaacgatgcaaaatttagaat 27129784  T
Q  217 caccaattt 225  Q
    |||||||||    
T  27129783 caccaattt 27129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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