View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2385_low_3 (Length: 536)

Name: NF2385_low_3
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2385_low_3
NF2385_low_3
[»] chr7 (2 HSPs)
chr7 (11-528)||(37125339-37125840)
chr7 (256-329)||(17264880-17264953)
[»] chr2 (4 HSPs)
chr2 (226-528)||(43326102-43326407)
chr2 (226-302)||(4009255-4009331)
chr2 (226-329)||(29522544-29522647)
chr2 (226-331)||(36620159-36620264)
[»] chr6 (3 HSPs)
chr6 (226-528)||(92309-92611)
chr6 (228-319)||(10895561-10895652)
chr6 (254-329)||(6253762-6253837)
[»] chr4 (3 HSPs)
chr4 (226-528)||(55403335-55403644)
chr4 (274-321)||(258205-258252)
chr4 (226-345)||(22460415-22460534)
[»] chr1 (3 HSPs)
chr1 (226-528)||(12307715-12307996)
chr1 (226-302)||(19659730-19659805)
chr1 (226-299)||(5733162-5733235)
[»] scaffold0026 (1 HSPs)
scaffold0026 (226-358)||(91559-91691)
[»] scaffold1342 (1 HSPs)
scaffold1342 (226-302)||(1228-1304)
[»] chr5 (2 HSPs)
chr5 (226-284)||(3805688-3805746)
chr5 (226-276)||(22775943-22775993)
[»] chr3 (1 HSPs)
chr3 (258-302)||(14834456-14834500)


Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Original strand, 37125339 - 37125840
Alignment:
Q  11 caacgaggtcttggtaactcaaatttatcaccttctccgcgatgtccaattgaagtgtcttggcaacatggtgataattataccttggtcctaaatgttg 110  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37125339 caacgaggtcttggtaactcgaatttatcaccttctccgtgatgtccaattgaagtgtcttggcaacatggtgataattataccttggtcctaaatgttg 37125438  T
Q  111 atggtagtgttataacaaatccgggacgaacaagttatggttgtcttgtgcgcaactctgatgacaatttcttgtttaggttttatggtagtgtgggttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  37125439 atggtagtgttataacaaatccgggacgaacaagttatggttgtcttgtgcgcaactctgatgacaatttattgtttaggttttatggtcgtgtgggttt 37125538  T
Q  211 gtaatacattttactagtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattt 310  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  37125539 gtaatacattttaccagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattt 37125638  T
Q  311 taattttacaaccatgccattgacccactctcccagactcccactctctcattcgtannnnnnncttcttctcagaactggaaagaaaagaagcgcttct 410  Q
    |||||||||||||||||||||||                | ||||||||||||||||       ||||||||||||| || |||||||||||||||||||    
T  37125639 taattttacaaccatgccattga----------------ctcactctctcattcgtatttttttcttcttctcagaattgtaaagaaaagaagcgcttct 37125722  T
Q  411 tttcccatcctcacccattcacgattcacccaccgcccgccgacggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttcta 510  Q
    |||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37125723 tttctcatcctcactcattcacgattcacccaccggccgccggcggcaacatcaccttcatccaccggaaatcggtcgtgacagacgaactctccttcta 37125822  T
Q  511 actcaaagccttcatctc 528  Q
    ||||||||||| ||||||    
T  37125823 actcaaagcctccatctc 37125840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 17264953 - 17264880
Alignment:
Q  256 gccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccatgcca 329  Q
    ||||||||||||||||| ||| |||||||  ||||| ||||||||||  |||||||||| |||| | |||||||    
T  17264953 gccatggcctacccatttattttgtgaaaagactataatacccttgaagtaattttaatattactatcatgcca 17264880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 226 - 528
Target Start/End: Original strand, 43326102 - 43326407
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    ||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43326102 agtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccat 43326201  T
Q  326 gccattgacccactctcccagactcccactctctcattcgtannnnnnncttcttctcagaactggaaagaaaagaagcgcttcttttcccatcctcacc 425  Q
    | ||| |||||||| ||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43326202 gtcatcgacccactatcccaaactcccactctctcattcgtatttttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctcacc 43326301  T
Q  426 cattcacgattcacccaccgcccg---ccgacggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaagcctt 522  Q
    |||||||||||||||||||| | |   | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43326302 cattcacgattcacccaccggcggcaacaggcggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaagcctc 43326401  T
Q  523 catctc 528  Q
    ||||||    
T  43326402 catctc 43326407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 4009255 - 4009331
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttga 302  Q
    |||||||||||||| ||||||||||  ||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  4009255 agtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 4009331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 29522647 - 29522544
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    |||||||||||||| || |||| || ||||||||||||||||||||| ||| ||||||| |||||| || ||| ||   |||||||||| |||| |||||    
T  29522647 agtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatactataatgcccctggattaattttaatattactaccat 29522548  T
Q  326 gcca 329  Q
    ||||    
T  29522547 gcca 29522544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 36620264 - 36620159
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    |||||||||||||| || |||| || |||||| ||| ||| |||||||||| ||||||||||| || |||||||| |  |||||| ||| ||||| | ||    
T  36620264 agtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaatattacagctat 36620165  T
Q  326 gccatt 331  Q
    ||||||    
T  36620164 gccatt 36620159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 226 - 528
Target Start/End: Original strand, 92309 - 92611
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  92309 agtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaaccat 92408  T
Q  326 gccattgacccactctcccagactcccactctctcattcgtannnnnnncttcttctcagaactggaaagaaaagaagcgcttcttttcccatcctcacc 425  Q
    ||||||||||||||||| |  ||||||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||| |||||||| |    
T  92409 gccattgacccactctctcccactcccactctctcattcgt-----tttcttcttctcataactggaaagaaaagaagcgcttcttttctcatcctca-c 92502  T
Q  426 cattcacgattcacccaccgc------ccgccgacggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaagc 519  Q
    |||||||||||||||||||||      |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92503 cattcacgattcacccaccgccaccggccgccggcggtaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaagc 92602  T
Q  520 cttcatctc 528  Q
    || ||||||    
T  92603 ctccatctc 92611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 10895652 - 10895561
Alignment:
Q  228 tggcggagccacatggggacaggt-tatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttac 319  Q
    ||||||||||||||| |||| ||  |||| |||||||||||||||| |||||||||||  ||||| |||||| |||  |||||||||| ||||    
T  10895652 tggcggagccacatgaggactggggtatg-ccatggcctacccatttattctgtgaaaagactataatacccctgaggtaattttaatattac 10895561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 329
Target Start/End: Original strand, 6253762 - 6253837
Alignment:
Q  254 tggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccatgcca 329  Q
    ||||||||||||||||||| ||||||||||| ||| ||  | |||||||  |||||||||| |||| | |||||||    
T  6253762 tggccatggcctacccatttattctgtgaaaataccatattgcccttgagttaattttaatattactatcatgcca 6253837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 226 - 528
Target Start/End: Original strand, 55403335 - 55403644
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55403335 agtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaaccat 55403434  T
Q  326 gccattgaccca--ctctcccagactcccactctctcattcgtannnnnnncttcttctcagaactggaaagaaaagaagcgcttcttttcccatcctca 423  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||        |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  55403435 gccattgacccactctctcccagactcccgctctctcatttgtctttttttcttcttctcagaactggaaagaaaagaagcgcttcttttctcatcctca 55403534  T
Q  424 cccattcacgattcacccaccgc------ccgccgacggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaa 517  Q
     ||||||||||||||||||||||      |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  55403535 -ccattcacgattcacccaccgccaccggccgccggcggcaacatcaccttcatccaccgacaatcggtcgtgacagacgaactctccttctaactcaaa 55403633  T
Q  518 gccttcatctc 528  Q
    | || ||||||    
T  55403634 gtctccatctc 55403644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 258252 - 258205
Alignment:
Q  274 attctgtgaaattactatgatacccttgatataattttaattttacaa 321  Q
    |||||||||||||||||| ||||||||||  |||||||||| ||||||    
T  258252 attctgtgaaattactataatacccttgagttaattttaatattacaa 258205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 345
Target Start/End: Complemental strand, 22460534 - 22460415
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    ||||||||||||||||| |||| ||   |||||||  |||||||||| ||| |||||||  ||||| |||||| |||  |||||||||| ||||   |||    
T  22460534 agtggcggagccacatgtggactgggattggccataacctacccatttattttgtgaaaagactataatacccatgagttaattttaatattactgtcat 22460435  T
Q  326 gccattgacccactctccca 345  Q
    |||||| ||| ||| |||||    
T  22460434 gccatttaccaactatccca 22460415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 226 - 528
Target Start/End: Complemental strand, 12307996 - 12307715
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacctttggtataattttaattttacaaccat 12307897  T
Q  326 gccattgacccactctcccagactcccactctctcattcgtannnnnnnctt--cttctcagaactggaaagaaaa-gaagcgcttcttttcccatcctc 422  Q
     |||||||||||||||||||          |||||||| |||        ||   |||||||||| |||||||||| ||||||| ||||||| |||||||    
T  12307896 accattgacccactctccca----------ctctcattggtattattttttttctttctcagaacgggaaagaaaaggaagcgcatcttttctcatcctc 12307807  T
Q  423 acccattcacgattcacccaccgcccgccgacggcaacatcaccttcatccaccggcaatcggtcgtgacagacgaactctccttctaactcaaagcctt 522  Q
    ||||| |||              ||| ||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||||||  ||||||||||||     
T  12307806 acccagtca--------------cccaccggcggcaacatcaccttcatccactggcaatcggtcatgaccgacgaactctcctttgaactcaaagcctc 12307721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 19659805 - 19659730
Alignment:
Q  226 agtggcggagccacatggggac-aggttatggccatggcctacccattaattctgtgaaattactatgatacccttga 302  Q
    ||||||||||||||||| |||| |||  ||||||||||||| ||||||| || || ||||||||||| ||||||||||    
T  19659805 agtggcggagccacatgaggaccagg--atggccatggcctccccattatttttgggaaattactattatacccttga 19659730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 5733162 - 5733235
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgataccct 299  Q
    |||||||||||||| ||||||| ||  |||||||| |||||||||||| || || |||||||| || |||||||    
T  5733162 agtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaattacaattataccct 5733235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 91559 - 91691
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttgatataattttaattttacaaccat 325  Q
    ||||| |||||||| || ||||||| ||||||||||||||||||| || |||||||||||||  || |||||||||  ||||||||||| ||||||||||    
T  91559 agtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttgtcataattttaatattacaaccat 91658  T
Q  326 gccattgacccactctcccagactcccactctc 358  Q
     ||||| || | ||||||||  || ||||||||    
T  91659 tccattcactccctctcccactctgccactctc 91691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1342 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 1228 - 1304
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaattactatgatacccttga 302  Q
    |||||||||||||| ||||||||||  ||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  1228 agtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 3805746 - 3805688
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaattctgtgaaa 284  Q
    |||||| ||||||| || |||| || |||||||||||||||||||||||||||| ||||    
T  3805746 agtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaa 3805688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 22775943 - 22775993
Alignment:
Q  226 agtggcggagccacatggggacaggttatggccatggcctacccattaatt 276  Q
    |||||||||||||| ||||||||||   ||||||| |||||||||||||||    
T  22775943 agtggcggagccacttggggacaggggctggccatagcctacccattaatt 22775993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 14834456 - 14834500
Alignment:
Q  258 catggcctacccattaattctgtgaaattactatgatacccttga 302  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||    
T  14834456 catggcctgcccattatttttgtgaaattactattatacccttga 14834500  T

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