View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2385_low_8 (Length: 374)
Name: NF2385_low_8
Description: NF2385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2385_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 39536276 - 39536619
Alignment:
| Q |
14 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctc |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39536276 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagactgtacaaaaacatgtggaagctc |
39536375 |
T |
|
| Q |
114 |
aattacaacctgcaatgcaacagatgtagataagnnnnnnngaacacagatgaactcttcctaataaccttccaaattactaaatgaataaattattaaa |
213 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39536376 |
aattacaacctgcaatgcaatagatgtagataagaaaaaaagaacacagatgaactcttcctaataaccttccaaattactaaatgaataaattattaaa |
39536475 |
T |
|
| Q |
214 |
ttttcttttatgttctttaagatagtaaagacatatcagaacctattttttcttaagttggtttgtggagcggatttagaatattaattgatttaggaga |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39536476 |
ttttc-tttatgttctttaagatagtaaagacatatcagaacctattttttcttaagttggtttgtggagcggatttagaatattaattgatttaggaga |
39536574 |
T |
|
| Q |
314 |
acattgcagcagtcaaacgaaa---gagattttgaaataagagat |
355 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39536575 |
acattgcagcagtcaaacgaaagaggagattttgaaataagagat |
39536619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 1082882 - 1083007
Alignment:
| Q |
14 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctc |
113 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1082882 |
ataggcagcacaaaactttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagatcacagattgtacaaaaacatgtggaagctc |
1082981 |
T |
|
| Q |
114 |
aattacaacctgcaatgcaacagatg |
139 |
Q |
| |
|
|||||||||||| ||||||| ||||| |
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|
| T |
1082982 |
aattacaacctgaaatgcaagagatg |
1083007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 39545580 - 39545693
Alignment:
| Q |
20 |
accacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctcaattac |
119 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545580 |
accacaaaactttaaccacagaccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctcaattac |
39545679 |
T |
|
| Q |
120 |
aacctgcaatgcaa |
133 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39545680 |
aacctgcaatgcaa |
39545693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 39367983 - 39367864
Alignment:
| Q |
14 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctc |
113 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||| ||| |||||||||| ||| ||||| |
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|
| T |
39367983 |
ataggcaccacacaactttaaccaaagtccactcaaaaccaatcataacatacactacaatgccatagaccacagcttgcacaaaaacatatgggagctc |
39367884 |
T |
|
| Q |
114 |
aattacaacctgcaatgcaa |
133 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
39367883 |
tattacaacctgcaatgcaa |
39367864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 39562534 - 39562653
Alignment:
| Q |
14 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctc |
113 |
Q |
| |
|
|||||||||| | ||||||||||| || ||| |||||||||||||||||||| ||||||| |||||||| |||| |||||||||||||| ||| ||||| |
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|
| T |
39562534 |
ataggcaccaaagaaatttaaccacagaccattcaaaaccaatcatagcatacactataatgccatagactacagcttgtacaaaaacatatgggagctc |
39562633 |
T |
|
| Q |
114 |
aattacaacctgcaatgcaa |
133 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39562634 |
aattacaacctgcaatgcaa |
39562653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 39340464 - 39340344
Alignment:
| Q |
14 |
ataggcaccacaaaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctc |
113 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||| ||| |||| |
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|
| T |
39340464 |
ataggcaccacaaaactttaaccatagaccactcaaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctt |
39340365 |
T |
|
| Q |
114 |
a-attacaacctgcaatgcaa |
133 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
39340364 |
atattacaacctgcaatgcaa |
39340344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 39355273 - 39355166
Alignment:
| Q |
26 |
aaaatttaaccaaagtccactcaaaaccaatcatagcataaactataaatccatagaccacagattgtacaaaaacatgtggaagctcaattacaacctg |
125 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||| ||| ||||| || | |||||| |
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|
| T |
39355273 |
aaaatttaaccacagaccactccaaaccaatcatcgcatacactataatgccatagaccacagcttgtacaaaaacatatgggagctctatcaaaacctg |
39355174 |
T |
|
| Q |
126 |
caatgcaa |
133 |
Q |
| |
|
|||||||| |
|
|
| T |
39355173 |
caatgcaa |
39355166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 39367798 - 39367718
Alignment:
| Q |
169 |
tcttcctaataaccttccaaattactaaatgaataaattattaa--attttcttttatgttctttaagatagtaaagacat |
247 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| ||||| | |||| |||||||||||| ||||||||| |
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|
| T |
39367798 |
tcttcctaataaccttagaaattactaaatgattaaattattaactattttttgttattttctttaagatattaaagacat |
39367718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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