View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2386_high_3 (Length: 277)
Name: NF2386_high_3
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 5502896 - 5503001
Alignment:
| Q |
5 |
attttctaaaatttcctttcaaaaagaaaactcattttctaaaataataaacaatttgaaacaattaaatattctgaatattgtgacggtactagtagca |
104 |
Q |
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| T |
5502896 |
attttctaaaatttcctttcaaaaagaaaactcattttctaaaataataaacaatttgaaacaattaaatattctgaatattgtgacggtactagtagca |
5502995 |
T |
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| Q |
105 |
gtactg |
110 |
Q |
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|||||| |
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| T |
5502996 |
gtactg |
5503001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 5503017 - 5503137
Alignment:
| Q |
134 |
gttgaaatagaggtactgtttatttatatgaaatggatggagtatggagtactacaatatttactatttttcagttttggttcccaggaaatttttgtca |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5503017 |
gttgaaatagaggtactgtttatttatatgaaatggatggagtatggagtac---aatatttactatttttcagttttggttcccaggaaaattttgtca |
5503113 |
T |
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| Q |
234 |
gattgaatagcatcttggaaggtg |
257 |
Q |
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|||||||||||||||||||||||| |
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| T |
5503114 |
gattgaatagcatcttggaaggtg |
5503137 |
T |
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