View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2386_high_4 (Length: 273)
Name: NF2386_high_4
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 32266134 - 32265899
Alignment:
| Q |
16 |
ataaaaacataaccaagagtaaaatgcatatgagtatcaacataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
32266134 |
ataaaaacataaccaagagtaaaatgcatatgagtatcaacataaccactaattt-ctcccaatttttttttgtaattttttgatcaaggaaataaaata |
32266036 |
T |
|
| Q |
116 |
agagtgactaatgaatcaagaaggatttgtttgatatttgctcaattaggtttaactttcaacaaagactaaattgagaaaaccgaagcatttcttctca |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32266035 |
agagtgtctaatgaatcaagaaggatttgtttgatatttgctcaattaggtttaacttttaacaaagactaaattgagaaaaccgaagcatttcttctca |
32265936 |
T |
|
| Q |
216 |
attcttgtttagagttgacaatttctagtctcacaca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32265935 |
attcttgtttagagttgacaatttctagtctcacaca |
32265899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 32257330 - 32257188
Alignment:
| Q |
16 |
ataaaaacataaccaagagtaaaatgcatatgagtatcaa----cataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataa |
111 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32257330 |
ataaaagcataaccaagagtaaaaggcttatgagtatcaatcaacataaccactaatttcctcccaaaaatttatagtaattttttgatcaaggaaataa |
32257231 |
T |
|
| Q |
112 |
aat-aagagtgactaatgaatcaagaaggatttgtttgatatt |
153 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32257230 |
aataaagagtcactaatgaatcaagaaggatttgtttaatatt |
32257188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 32257075 - 32257020
Alignment:
| Q |
159 |
aattaggtttaactttcaacaaagactaaattgagaaaaccgaagcatttcttctc |
214 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
32257075 |
aattaggtttgactttcaacaaagactaaattgaggaaaccgaagcgtttcttctc |
32257020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 33178884 - 33178810
Alignment:
| Q |
174 |
tcaacaaagactaaattgagaaaaccgaagcatttcttctcaattcttgtttagagttgacaatttctagtctca |
248 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||||||||||| | || | |||||||||||| |||||||| |
|
|
| T |
33178884 |
tcaacaaagactaaattgacaaaaccggagcgtttcttctcaattcctcttcaaagttgacaatttgtagtctca |
33178810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 33179225 - 33179130
Alignment:
| Q |
24 |
ataaccaagagtaaaatgcatatgagtatcaacataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaataagag |
119 |
Q |
| |
|
|||||||| ||||||| || ||| |||||||||||| |||||||| ||||| |||||| || ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
33179225 |
ataaccaaaagtaaaaagcttatcagtatcaacatagccactaatcttctcacaaaaaatttcagtaatattttgataaaggaaataaaattagag |
33179130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University