View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2386_high_5 (Length: 254)
Name: NF2386_high_5
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 45565179 - 45565321
Alignment:
| Q |
19 |
cctgcaagccaaacgtaagatcatactaaaattgcgcaaataaaggctaattcaaagcccaaatcaactataagctcagtcagtagtgcctctattatat |
118 |
Q |
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| T |
45565179 |
cctgcaagccaaacgtaagatcatactaaaattgcgcaaataaaggctaattcaaagcccaaatcaactataagctcagtcagtagtgcctctattatat |
45565278 |
T |
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| Q |
119 |
agaaaatgccatcattttaaattcagtcgattgaataaacgta |
161 |
Q |
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| T |
45565279 |
agaaaatgccatccttttaaattcagtcgattgaataaacgta |
45565321 |
T |
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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 45565382 - 45565471
Alignment:
| Q |
161 |
agatgaagacacaagggtgcacggtgtaaactcagttatcacatgctttattggtatgatgaagaacagtgagttcctttcttctcactc |
250 |
Q |
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| T |
45565382 |
agatgaagacacaagggtgcacggtgtaaactcagttatcacatgctttattggtatgatgaagaacagtgagttcctttcttctcactc |
45565471 |
T |
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