View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2386_high_7 (Length: 246)
Name: NF2386_high_7
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 32988688 - 32988461
Alignment:
| Q |
19 |
acgtgttgaagtaacaatggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgc |
118 |
Q |
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| T |
32988688 |
acgtgttgaagtaacaatggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgc |
32988589 |
T |
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| Q |
119 |
ttttggtccttggaagttgaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctca |
218 |
Q |
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| T |
32988588 |
ttttggtccttggaagttgaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctca |
32988489 |
T |
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| Q |
219 |
tttggaatctcatggcaagtgcacatac |
246 |
Q |
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| T |
32988488 |
tttggaatctcatggcaagtacacatac |
32988461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 32960195 - 32960034
Alignment:
| Q |
26 |
gaagtaacaatggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggt |
125 |
Q |
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| T |
32960195 |
gaagtgacgatggacggtggtgaaacatggcaagtatgcaaattggagcatcaagagaaaccaagcaaatatggaaaatattggtgttggtgcttttggt |
32960096 |
T |
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| Q |
126 |
ccttggaagttgaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggat |
187 |
Q |
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| T |
32960095 |
ctttagaggttgaagtgttagacttttttggagccaaagagattgcagtacgtgcatgggat |
32960034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 24863693 - 24863496
Alignment:
| Q |
29 |
gtaacaatggacggtggtgaaacatggcaagtatgcacattggaccattcagaaaaaccaaacaagtacggtaagtactggtgctggtgcttttggtcct |
128 |
Q |
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| T |
24863693 |
gtaacaatggacggtggagaaacatggcacgtgtgcacattggaccatccagaaaaaccaacaaaatatggaaaatattggtgttggtgcttttggtctc |
24863594 |
T |
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| Q |
129 |
tggaagttgaagtgttggaccttctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaat |
226 |
Q |
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| T |
24863593 |
tggaagttgaggtgctggaccttcttggaaccaaggagattgctgtaagagcatgggatgaggcactcaacacccaacctgaaaatctcatttggaat |
24863496 |
T |
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