View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2386_high_9 (Length: 236)
Name: NF2386_high_9
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_high_9 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 10555 - 10359
Alignment:
| Q |
24 |
ggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtcctttt |
123 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10555 |
ggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtcctttt |
10456 |
T |
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| Q |
124 |
ccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
220 |
Q |
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| T |
10455 |
ccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
10359 |
T |
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Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 420016 - 420212
Alignment:
| Q |
24 |
ggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtcctttt |
123 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
420016 |
ggtattgaattagcaacttggcgcggcaagaatgttgccgcatttgaagtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtcctttt |
420115 |
T |
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| Q |
124 |
ccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
220 |
Q |
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| T |
420116 |
ccaaaaagaagagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
420212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 975149 - 974950
Alignment:
| Q |
20 |
aaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
975149 |
aaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttgaagtggtcttagagaattgcaagttcagttttgttccatgatgcaggtcc |
975050 |
T |
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| Q |
120 |
ttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctcacttgcagcataattgtaactaaatggagaacgtccaactccaacattca |
219 |
Q |
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| T |
975049 |
ttttccagaaagaagagtgctacatttggtttatcatgtaattgagtctcacttgcagcataattataaataaatggagaacgtccaactccaacattca |
974950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 187
Target Start/End: Complemental strand, 936296 - 936173
Alignment:
| Q |
64 |
catttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactg |
163 |
Q |
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| T |
936296 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacatttggtttatcatgtaactg |
936197 |
T |
|
| Q |
164 |
agtctcacttgcagcataattgta |
187 |
Q |
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|| |||||||||||||||||||| |
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| T |
936196 |
tgtttcacttgcagcataattgta |
936173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 924072 - 924022
Alignment:
| Q |
74 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttc |
124 |
Q |
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|||||| |||||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
924072 |
ggtctttgtgaattgcatgttcaattttgtaccattatgcaagtccttttc |
924022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 942208 - 942174
Alignment:
| Q |
81 |
gtgaattgcaagttcaattttgttccatgatgcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
942208 |
gtgaattgcaagttcaattttgttccatgatgcaa |
942174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 960173 - 960123
Alignment:
| Q |
65 |
atttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaa |
115 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
960173 |
atttgaagttgtctctttgaattgcaagttcaattttgttccatgatgcaa |
960123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 971478 - 971444
Alignment:
| Q |
81 |
gtgaattgcaagttcaattttgttccatgatgcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
971478 |
gtgaattgcaagttcaattttgttccatgatgcaa |
971444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 949183 - 949151
Alignment:
| Q |
83 |
gaattgcaagttcaattttgttccatgatgcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
949183 |
gaattgcaagttcaattttgttccatgatgcaa |
949151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 909539 - 909488
Alignment:
| Q |
74 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttcc |
125 |
Q |
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|||||| |||||||| | ||| |||||||| ||||||||||||||||||||| |
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| T |
909539 |
ggtctttgtgaattgtatgttgaattttgtaccatgatgcaagtccttttcc |
909488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 916030 - 915980
Alignment:
| Q |
74 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttc |
124 |
Q |
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|||||| |||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
916030 |
ggtctttgtgaattgcatgttcaattttgtaccattgtgcaagtccttttc |
915980 |
T |
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