View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2386_low_13 (Length: 206)

Name: NF2386_low_13
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2386_low_13
NF2386_low_13
[»] chr4 (32 HSPs)
chr4 (112-188)||(8655670-8655746)
chr4 (113-188)||(5817778-5817853)
chr4 (113-180)||(3130583-3130650)
chr4 (38-97)||(34016649-34016709)
chr4 (39-86)||(46823497-46823545)
chr4 (112-180)||(47540393-47540461)
chr4 (35-97)||(26040385-26040448)
chr4 (39-97)||(35511205-35511264)
chr4 (35-97)||(35675215-35675278)
chr4 (31-86)||(36486722-36486778)
chr4 (38-97)||(51266948-51267008)
chr4 (35-97)||(19328953-19329016)
chr4 (35-96)||(15986287-15986349)
chr4 (113-178)||(1121585-1121649)
chr4 (113-178)||(7663847-7663912)
chr4 (38-86)||(10100149-10100198)
chr4 (41-97)||(32131169-32131226)
chr4 (35-94)||(30475446-30475506)
chr4 (35-94)||(32584547-32584607)
chr4 (38-97)||(52341625-52341685)
chr4 (38-97)||(55669763-55669823)
chr4 (35-97)||(3769834-3769897)
chr4 (42-97)||(40593630-40593685)
chr4 (44-97)||(11996128-11996182)
chr4 (32-97)||(20435815-20435881)
chr4 (38-95)||(23765602-23765660)
chr4 (38-85)||(20811287-20811335)
chr4 (32-94)||(23260722-23260786)
chr4 (31-94)||(30199814-30199878)
chr4 (35-94)||(31754959-31755019)
chr4 (46-97)||(33951732-33951784)
chr4 (38-97)||(35808421-35808481)
[»] chr1 (35 HSPs)
chr1 (112-188)||(21527628-21527704)
chr1 (112-188)||(9528350-9528426)
chr1 (112-180)||(4644480-4644548)
chr1 (112-188)||(14366221-14366297)
chr1 (112-180)||(52336130-52336198)
chr1 (114-188)||(48266315-48266389)
chr1 (38-97)||(11385832-11385892)
chr1 (112-178)||(36928634-36928699)
chr1 (35-97)||(41898881-41898944)
chr1 (35-97)||(50295455-50295518)
chr1 (112-178)||(36305251-36305316)
chr1 (39-97)||(48938661-48938719)
chr1 (35-94)||(17402969-17403029)
chr1 (35-97)||(4940762-4940825)
chr1 (39-97)||(8892793-8892852)
chr1 (35-97)||(22346259-22346322)
chr1 (35-97)||(40845272-40845335)
chr1 (113-178)||(17921618-17921681)
chr1 (113-178)||(25640072-25640137)
chr1 (38-97)||(34874591-34874651)
chr1 (39-97)||(14331862-14331921)
chr1 (39-85)||(28850944-28850991)
chr1 (39-97)||(43168166-43168225)
chr1 (39-97)||(44359694-44359753)
chr1 (113-180)||(47115756-47115823)
chr1 (35-97)||(49508756-49508818)
chr1 (47-97)||(49901959-49902010)
chr1 (31-97)||(52396460-52396526)
chr1 (38-97)||(932179-932239)
chr1 (38-97)||(2125729-2125789)
chr1 (35-94)||(8414842-8414902)
chr1 (38-97)||(11386005-11386065)
chr1 (38-97)||(24140797-24140857)
chr1 (31-59)||(26469643-26469671)
chr1 (38-85)||(32213923-32213971)
[»] scaffold0029 (1 HSPs)
scaffold0029 (112-182)||(135239-135309)
[»] scaffold0002 (3 HSPs)
scaffold0002 (112-182)||(313066-313136)
scaffold0002 (112-182)||(328520-328590)
scaffold0002 (112-146)||(321781-321815)
[»] chr5 (17 HSPs)
chr5 (112-188)||(10487503-10487579)
chr5 (31-97)||(12068199-12068266)
chr5 (36-97)||(25017316-25017378)
chr5 (35-90)||(39069308-39069364)
chr5 (44-97)||(11594702-11594756)
chr5 (39-88)||(28996238-28996288)
chr5 (39-97)||(39167621-39167679)
chr5 (38-97)||(1759841-1759901)
chr5 (46-97)||(27823291-27823343)
chr5 (39-89)||(678475-678526)
chr5 (38-97)||(16315559-16315617)
chr5 (38-94)||(27535118-27535176)
chr5 (35-97)||(10406809-10406871)
chr5 (35-97)||(6823777-6823841)
chr5 (38-97)||(4421989-4422049)
chr5 (38-97)||(35653280-35653340)
chr5 (38-97)||(43414089-43414149)
[»] scaffold0220 (1 HSPs)
scaffold0220 (112-188)||(22810-22886)
[»] chr3 (26 HSPs)
chr3 (31-95)||(11316983-11317048)
chr3 (113-180)||(32004449-32004516)
chr3 (113-179)||(13447948-13448014)
chr3 (35-97)||(52570803-52570866)
chr3 (116-178)||(38542823-38542885)
chr3 (35-94)||(34060794-34060854)
chr3 (112-178)||(30167954-30168020)
chr3 (38-97)||(8715526-8715586)
chr3 (38-97)||(9067413-9067473)
chr3 (35-94)||(51817340-51817400)
chr3 (31-97)||(39436482-39436549)
chr3 (35-97)||(49976166-49976229)
chr3 (38-94)||(29915603-29915660)
chr3 (38-94)||(29964756-29964813)
chr3 (38-94)||(36730181-36730238)
chr3 (38-97)||(4759875-4759935)
chr3 (35-97)||(45899568-45899632)
chr3 (35-97)||(18812-18875)
chr3 (35-97)||(18953-19016)
chr3 (35-85)||(37509132-37509183)
chr3 (39-90)||(51256106-51256157)
chr3 (35-97)||(25102347-25102409)
chr3 (34-94)||(26850522-26850583)
chr3 (38-97)||(10854883-10854943)
chr3 (38-97)||(32415593-32415653)
chr3 (38-85)||(44570423-44570471)
[»] chr6 (13 HSPs)
chr6 (114-180)||(33629568-33629634)
chr6 (114-178)||(1682510-1682574)
chr6 (35-97)||(7875206-7875269)
chr6 (35-97)||(27127532-27127595)
chr6 (39-97)||(28998956-28999015)
chr6 (38-97)||(29692366-29692426)
chr6 (35-97)||(7880452-7880515)
chr6 (35-97)||(28014656-28014719)
chr6 (31-80)||(21186059-21186109)
chr6 (31-95)||(31220354-31220419)
chr6 (38-97)||(10855456-10855516)
chr6 (38-97)||(12191517-12191577)
chr6 (39-94)||(14232519-14232575)
[»] chr7 (27 HSPs)
chr7 (113-178)||(19402686-19402751)
chr7 (35-97)||(42222242-42222305)
chr7 (31-97)||(5240357-5240424)
chr7 (116-178)||(15654314-15654376)
chr7 (112-178)||(21277659-21277724)
chr7 (38-94)||(29034711-29034768)
chr7 (112-164)||(9534139-9534191)
chr7 (38-97)||(43567531-43567591)
chr7 (35-97)||(32204203-32204266)
chr7 (35-94)||(42552500-42552559)
chr7 (31-87)||(30388695-30388752)
chr7 (38-97)||(8292769-8292829)
chr7 (35-81)||(27053534-27053581)
chr7 (38-84)||(29687500-29687547)
chr7 (35-97)||(40774267-40774330)
chr7 (39-97)||(41141049-41141108)
chr7 (35-97)||(49069576-49069639)
chr7 (39-85)||(29247948-29247994)
chr7 (38-94)||(8380465-8380522)
chr7 (38-94)||(36279143-36279200)
chr7 (38-94)||(41188814-41188871)
chr7 (38-85)||(3681718-3681766)
chr7 (38-85)||(5348009-5348057)
chr7 (34-97)||(43958108-43958172)
chr7 (34-97)||(44391015-44391079)
chr7 (38-97)||(46042772-46042831)
chr7 (38-85)||(48454859-48454907)
[»] chr8 (18 HSPs)
chr8 (112-180)||(19385314-19385382)
chr8 (36-97)||(19389335-19389397)
chr8 (37-97)||(3174483-3174544)
chr8 (113-178)||(7451820-7451884)
chr8 (35-94)||(25249369-25249429)
chr8 (58-97)||(7532830-7532869)
chr8 (38-97)||(8018785-8018845)
chr8 (113-177)||(12531185-12531249)
chr8 (38-97)||(18068986-18069046)
chr8 (38-97)||(21016258-21016318)
chr8 (39-97)||(11332819-11332878)
chr8 (35-97)||(31596446-31596509)
chr8 (35-97)||(38870025-38870088)
chr8 (39-97)||(39972177-39972236)
chr8 (40-97)||(6841721-6841779)
chr8 (29-94)||(8810514-8810580)
chr8 (35-94)||(6433565-6433625)
chr8 (34-97)||(20169305-20169369)
[»] chr2 (19 HSPs)
chr2 (38-97)||(862613-862673)
chr2 (38-97)||(6999226-6999286)
chr2 (44-94)||(2958497-2958548)
chr2 (39-97)||(10522816-10522875)
chr2 (119-178)||(45420990-45421049)
chr2 (39-88)||(2209950-2210000)
chr2 (31-86)||(23685688-23685744)
chr2 (35-94)||(33864376-33864436)
chr2 (39-97)||(747516-747575)
chr2 (47-97)||(37230253-37230304)
chr2 (38-85)||(39401572-39401619)
chr2 (58-97)||(41890144-41890183)
chr2 (38-79)||(9965098-9965140)
chr2 (38-94)||(41436502-41436559)
chr2 (38-85)||(765187-765235)
chr2 (38-85)||(2966564-2966612)
chr2 (35-94)||(11659283-11659343)
chr2 (66-94)||(31911193-31911221)
chr2 (65-97)||(34316349-34316381)
[»] scaffold2122 (1 HSPs)
scaffold2122 (39-88)||(652-702)
[»] scaffold0418 (1 HSPs)
scaffold0418 (113-178)||(7141-7206)
[»] scaffold0144 (1 HSPs)
scaffold0144 (41-97)||(39614-39671)
[»] scaffold0014 (1 HSPs)
scaffold0014 (44-95)||(73469-73521)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 8655746 - 8655670
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  8655746 gaaaaagccaaaatgaaattatataacaatgcagcccgtagagcacaaggtgtgccatagagactacaaacaggaac 8655670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 5817853 - 5817778
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  5817853 aaaaagccaaaataaaattatataacaatgcagtccctagagcacagggtgtgccatagagactacaaacaggaac 5817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 3130650 - 3130583
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    |||||||||||||||||||||||||||||||||   ||| || |||||||||||| ||||||||||||    
T  3130650 aaaaagccaaaatgaaattatataacaatgcagttcctaaagtacaaggtgtgccgtagagactacaa 3130583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 34016649 - 34016709
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||    
T  34016649 attttgacttttaaaaagttaaattcatcacttttcaccattttccaatgctatatttcta 34016709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 46823497 - 46823545
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaata 86  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46823497 ttttgacttttaaaaagttaaattcataacttttcaccattttccaata 46823545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 47540393 - 47540461
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    |||||||||||||||||||||||||||||||||| | |||  |||||| |||||| ||||| |||||||    
T  47540393 gaaaaagccaaaatgaaattatataacaatgcagtccctaacgcacaaagtgtgctatagatactacaa 47540461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 26040448 - 26040385
Alignment:
Q  35 aatattttgacttttaaaaagttaat-tcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||||||  | || |||||||||||||||||||||| |||||||||    
T  26040448 aatattttgacttttaaaaagttaaacttatcacttttcaccattttccaatactatatttcta 26040385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 35511264 - 35511205
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||    
T  35511264 ttttaacttttaaaaagtcaaattcatcacttttcaccattttccaatacaatatttcta 35511205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 35675278 - 35675215
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| |||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  35675278 aatattttaacttttaaaaagttaaattcatcacttttcactatttcccaatacaatatttcta 35675215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 36486778 - 36486722
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaata 86  Q
    |||||||||||||||||||||||| || ||||| | |||||||||||||||||||||    
T  36486778 caataatattttgacttttaaaaaattaaattcttcacttttcaccattttccaata 36486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 51266948 - 51267008
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || ||||||||||||||| |||||| |||||||||    
T  51266948 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttcta 51267008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 19329016 - 19328953
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || || ||||||||||||||||| | |||||||||    
T  19329016 aatattttgacttttaaaaagttaaatttatcacatttcaccattttccaatgctatatttcta 19328953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 15986287 - 15986349
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttct 96  Q
    |||||| ||||||||||||| |||| ||||  ||||||||||||||| |||||||||||||||    
T  15986287 aatattctgacttttaaaaatttaaattcaccacttttcaccatttttcaatacaatatttct 15986349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 1121649 - 1121585
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||||| |||||||||| |||| | |||||||| |||||||||| |||| |||||    
T  1121649 aaaaagccaaaatgaaa-tatataacaaagcagtccctagagcataaggtgtgccttagaaactac 1121585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 7663912 - 7663847
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||| |||||||||||| |||  | ||| |||| |||||||||| ||||||||||    
T  7663912 aaaaagccaaaatgagattatataacaaagcaatccctaaagcataaggtgtgccttagagactac 7663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 10100198 - 10100149
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaata 86  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  10100198 attttgacttttaaaaagttaaatttataacttttcaccattttctaata 10100149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 32131169 - 32131226
Alignment:
Q  41 ttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| || || |||| ||||||||||||||||| |||||||||    
T  32131169 ttgacttttaaaaagttaaatttatcacttatcaccattttccaatactatatttcta 32131226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 30475446 - 30475506
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||||| |||||| ||||||    
T  30475446 aatattttgacatttaaaaagttaaatttatcacttttcaccatttttcaatactatattt 30475506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 32584607 - 32584547
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||||| || |||||||||    
T  32584607 aatattttaacttttaaaaagttgaattcattactttttaccattttctaacacaatattt 32584547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 52341625 - 52341685
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| ||||||| | |||||| |||||||||| | ||||||||||    
T  52341625 attttgacttttaaaaagttaaattcatcatttttcatcattttccaacataatatttcta 52341685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 55669763 - 55669823
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || | |||||||||||||||||| | |||||||||    
T  55669763 attttgacttttaaaaagttaaatttatcatttttcaccattttccaatgctatatttcta 55669823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 3769834 - 3769897
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| ||||||||||||| || || || ||||||||||||||| |||| |||||||||||    
T  3769834 aatattttaacttttaaaaagtcaaatttatcacttttcaccatttttcaatgcaatatttcta 3769897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 40593630 - 40593685
Alignment:
Q  42 tgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||  | ||||||| ||||||||| |||| |||||||||||||||||    
T  40593630 tgacttttaaaagttaaattcatcacttttcactatttcccaatacaatatttcta 40593685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 11996182 - 11996128
Alignment:
Q  44 acttttaaaaagttaattc-ataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| |||||||| || || |||||||||||||||||||||||| |||||||    
T  11996182 acttttagaaagttaaatctatcacttttcaccattttccaatacaacatttcta 11996128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 20435881 - 20435815
Alignment:
Q  32 aataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||| |||||| |||||||||||| ||||| | ||||||||| ||||||||| ||||| ||||||    
T  20435881 aataatgttttgatttttaaaaagttaaattcttcacttttcacaattttccaagacaatgtttcta 20435815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 23765602 - 23765660
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttc 95  Q
    ||||||| |||||||||||||| || || |||||||||||||||||||| | |||||||    
T  23765602 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttc 23765660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 20811287 - 20811335
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||| |||| || ||||||||||| ||||||||    
T  20811287 attttgacttttaaaaagttaaatttatcacttttcaccaatttccaat 20811335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 23260722 - 23260786
Alignment:
Q  32 aataatattttgacttttaaaaagtt-aattcat-aacttttcaccattttccaatacaatattt 94  Q
    ||||||||||| |||||||||||||| ||||||| | |||||||||||||  |||| ||||||||    
T  23260722 aataatattttaacttttaaaaagttaaattcatcagcttttcaccatttctcaatgcaatattt 23260786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 30199878 - 30199814
Alignment:
Q  31 caataatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||| ||||||||||| |||| ||||| |||||| | |||||| |||| ||||||||    
T  30199878 caataatattttaacttttaaaaaattaatttcatcactttttatcatttttcaatgcaatattt 30199814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 31754959 - 31755019
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||||||||||||||| |||| || |||||||| |||||| |||| | ||||||    
T  31754959 aatattttgacttttaaaaagttaaatttatcacttttcatcatttttcaattctatattt 31755019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 33951732 - 33951784
Alignment:
Q  46 ttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||| || || ||||||||| |||||||||||| |||||||||    
T  33951732 ttttaaaaagttaaatttatcacttttcacaattttccaatactatatttcta 33951784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 35808481 - 35808421
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || | ||||||| |||||||||| | |||||||||    
T  35808481 attttgacttttaaaaagttaaatttatcatttttcacaattttccaatgctatatttcta 35808421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 21527628 - 21527704
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  21527628 gaaaaagccaaaatgaaattatataacagtgcagtccctagagcacaaggtgtgccatagagactacaaacaggaac 21527704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 9528426 - 9528350
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||    
T  9528426 gaaaaagctaaaatgaaattatataacaatgcagtccctagagcataaggtgtgccatagagactacaaacaggaac 9528350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 4644480 - 4644548
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  4644480 gaaaaagccaaaacgaaattatataacaatgcagtccctagagcacaaggtgtgccatagagactacaa 4644548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 14366297 - 14366221
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||| |||||||||||    
T  14366297 gaaaaagccaaaataaaattatataacaatgcaatccctagagcacaaggtgtgccatagagactgcaaacaggaac 14366221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 52336130 - 52336198
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  52336130 gaaaaagccaaaatgaaattatataacaatgcagtctctagagcacaatgtgtgccatagagattacaa 52336198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 48266389 - 48266315
Alignment:
Q  114 aaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||    
T  48266389 aaaagccaaaatgaaattatataacaatgcaattcctagagcacaatgtgtgccatagagactacaaacaggaac 48266315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 11385892 - 11385832
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  11385892 attttgacttttaaaaagttaaatttataacttttcaccattttccaatactatatttcta 11385832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 36928634 - 36928699
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||| ||||||||||    
T  36928634 gaaaaagccaaaatgaaat-atataacaaagcagtccctagagcacaaggtgtgccttagagactac 36928699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 41898944 - 41898881
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| |||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||    
T  41898944 aatattttaacttttaaaaagttaaattcatcactttttaccatttttcaatacaatatttcta 41898881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 50295518 - 50295455
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || ||||||||| |||||||||||| |||||||||    
T  50295518 aatattttgacttttaaaaagttaaatttatcacttttcactattttccaatactatatttcta 50295455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 36305251 - 36305316
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||||||| |||||||||  ||| | ||||||||||||||||||| ||||||||||    
T  36305251 gaaaaagccaaaatgaaat-atataacaaaacagtccctagagcacaaggtgtgccttagagactac 36305316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 48938661 - 48938719
Alignment:
Q  39 ttttgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||| ||||  | |||||||||||||||| |||||||||||||||    
T  48938661 ttttgacttttaaaaagtaaatttttcacttttcaccattttctaatacaatatttcta 48938719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 17402969 - 17403029
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||  ||||||||||||    
T  17402969 aatattttgacttttaaaaagttaaattcatcactttttaccattttttaatacaatattt 17403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 4940825 - 4940762
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || |||||| ||||||||||||| | |||||||||    
T  4940825 aatattttgacttttaaaaagttaaatttatcacttttaaccattttccaatgctatatttcta 4940762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 8892852 - 8892793
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||| || ||||||    
T  8892852 ttttgacttttaaaaagttaaattctttacttttcaccattttccaatacgatgtttcta 8892793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 22346322 - 22346259
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || || ||||||||||||||| |||||| |||||||||    
T  22346322 aatattttgacttttaaaaaattaaatttatcacttttcaccatttttcaatactatatttcta 22346259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 40845272 - 40845335
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||| |||||||||||||| || || ||||||||||||||| |||||| |||||||||    
T  40845272 aatattttgatttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttcta 40845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 17921681 - 17921618
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||| ||||||  |||| |||| | ||||||||||||||||||| ||||||||||    
T  17921681 aaaaagccaaaatgagattata--acaaagcagtccctagagcacaaggtgtgccttagagactac 17921618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 25640137 - 25640072
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    |||||| |||||||| ||||||||| || |||| |||||||||||||||| |||  ||||||||||    
T  25640137 aaaaagtcaaaatgagattatataataaagcagtctctagagcacaaggtctgctttagagactac 25640072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 34874591 - 34874651
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||| |||| || || |||||||||||||||||||| | |||||||||    
T  34874591 attttgacttttaaaaaattaaatttatcacttttcaccattttccaatgctatatttcta 34874651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 14331862 - 14331921
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||| ||| | | |||||||||||| |||||||||| ||||||    
T  14331862 ttttgacttttaaaaagttaaattcttcatttttcaccatttcccaatacaatgtttcta 14331921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 28850991 - 28850944
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||    
T  28850991 ttttgacttttaaaaagttaaatttatcacttttcaccattttccaat 28850944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 43168166 - 43168225
Alignment:
Q  39 ttttgacttttaaaaagttaat-tcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||  || | |||||||||||||| |||||||||| ||||||    
T  43168166 ttttgacttttaaaaagttaaactcttcacttttcaccatttcccaatacaatgtttcta 43168225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 44359753 - 44359694
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| ||||| | |||||||||||||| || ||||||| ||||||    
T  44359753 ttttgacttttaaaaagttaaattcttcacttttcaccatttcccgatacaatgtttcta 44359694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 47115756 - 47115823
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    ||||||| ||||||||||||||||| |||| ||    |||||||||||||||| | ||||||||||||    
T  47115756 aaaaagctaaaatgaaattatataataatgaagttcttagagcacaaggtgtgtcttagagactacaa 47115823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 49508818 - 49508756
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || || ||||||||||||||||| | |||||||||    
T  49508818 aatattttgacttttaaaaagttaaatttatcac-tttcaccattttccaatgctatatttcta 49508756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 49901959 - 49902010
Alignment:
Q  47 tttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||| || || |||||||||||||||||||||| |||||||||    
T  49901959 tttaaaaagttaaatttatcacttttcaccattttccaatactatatttcta 49902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 52396460 - 52396526
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||||||| |||| || |||||| | |||||| |||||| |||||||||    
T  52396460 caataatattttgacttttaaaaagttaaatttatcactttt-atcatttttcaatactatatttcta 52396526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 932239 - 932179
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||| |||| || |||| |||||| ||||||||||| | |||||||||    
T  932239 attttgacttttaaaaaattaaatttataatttttcatcattttccaatgctatatttcta 932179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 2125789 - 2125729
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || ||||||||| ||||| |||| | |||||||||    
T  2125789 attttgacttttaaaaagttaaatttatcacttttcacaatttttcaatgctatatttcta 2125729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 8414902 - 8414842
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||| ||||||||||| | || ||||| || ||||||||||||| ||||||||||||    
T  8414902 aatattttaacttttaaaaaatcaaattcatcacatttcaccattttctaatacaatattt 8414842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 11386005 - 11386065
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || | |||| ||||||||||||| | |||||||||    
T  11386005 attttgacttttaaaaagttaaatttatcaatttttaccattttccaatgctatatttcta 11386065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 24140797 - 24140857
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||| |||||||||| || || || ||||||||||||||||||  |||||||||    
T  24140797 attttgactttaaaaaagttaagtttatcacgtttcaccattttccaatagtatatttcta 24140857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 26469671 - 26469643
Alignment:
Q  31 caataatattttgacttttaaaaagttaa 59  Q
    |||||||||||||||||||||||||||||    
T  26469671 caataatattttgacttttaaaaagttaa 26469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 32213971 - 32213923
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaat 85  Q
    ||||||||||||||||| |||| || || ||||||||||||||||||||    
T  32213971 attttgacttttaaaaaattaaatttatcacttttcaccattttccaat 32213923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 135309 - 135239
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaac 182  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  135309 gaaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccatagagactacaaac 135239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 313136 - 313066
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaac 182  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  313136 gaaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccatagagactacaaac 313066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 328590 - 328520
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaac 182  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  328590 gaaaaagccaaaatgaaattatataacaatgcagcccctagagcacaaggcgtgccatagagactacaaac 328520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 321815 - 321781
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagc 146  Q
    |||||||||||||||||||||||||||||||||||    
T  321815 gaaaaagccaaaatgaaattatataacaatgcagc 321781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 10487579 - 10487503
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||    
T  10487579 gaaaaagccaaaatgaaattatataacaatgcagtccctagagcacaaggtgtgccatagagactacacacatgaac 10487503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 12068266 - 12068199
Alignment:
Q  31 caataatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||| |||||||||||||||||||||| || || |||||||||||||||||||||| |||||||||    
T  12068266 caataacattttgacttttaaaaagttaaatttatcacttttcaccattttccaatactatatttcta 12068199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 25017378 - 25017316
Alignment:
Q  36 atattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||||| || || ||||||||| |||||||||||| |||||||||    
T  25017378 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaatactatatttcta 25017316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 39069364 - 39069308
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaat 90  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| |||||||||||||||    
T  39069364 aatattttgacttttaaaatgttaaattcatcacttttcacaattttccaatacaat 39069308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 11594756 - 11594702
Alignment:
Q  44 acttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||    
T  11594756 acttataaaaagttgaattcacaacttttcaccattttccaacacaatatttcta 11594702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 28996238 - 28996288
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaataca 88  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  28996238 ttttaacttttaaaaagttgaattcacaacttttcaccattttccaataca 28996288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 39167621 - 39167679
Alignment:
Q  39 ttttgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||| |||||||||||||| |  | ||||||||||||||||||||||||| ||||||    
T  39167621 ttttgatttttaaaaagttaaatttttacttttcaccattttccaatacaatgtttcta 39167679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 1759841 - 1759901
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || ||||||| ||||||| |||||| |||||||||    
T  1759841 attttgacttttaaaaagttaaatttatcacttttctccatttttcaatactatatttcta 1759901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 27823291 - 27823343
Alignment:
Q  46 ttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||| || || |||||||||||||||||||||| |||||||||    
T  27823291 ttttaaaaagttaaatttatcacttttcaccattttccaatactatatttcta 27823343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 678475 - 678526
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaa 89  Q
    |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  678475 ttttaacttttaaaaggttaaattcattacttttcaccattttccaatacaa 678526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 16315617 - 16315559
Alignment:
Q  38 attttgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||| ||||||||||| || || |||||||||||||||||||| | |||||||||    
T  16315617 attttgactattaaaaagttattt-atcacttttcaccattttccaatgctatatttcta 16315559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 27535118 - 27535176
Alignment:
Q  38 attttgacttttaaaaagttaa--ttcataacttttcaccattttccaatacaatattt 94  Q
    ||||| ||||||||||| ||||  ||||| ||||||||||||||| |||||||||||||    
T  27535118 attttaacttttaaaaacttaaaattcatcacttttcaccatttttcaatacaatattt 27535176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 10406809 - 10406871
Alignment:
Q  35 aatattttgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||| ||| ||||| | |||| || ||||||| ||||||| ||||||||||||||||    
T  10406809 aatattttgaatttaaaaaattaaatttatcacttttctccatttttcaatacaatatttcta 10406871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 6823841 - 6823777
Alignment:
Q  35 aatattttgacttttaaaaagtt--aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| ||||||||||||||  |||| || ||||| |||| |||||| ||||||||||||||    
T  6823841 aatattttaacttttaaaaagttaaaatttattactttccaccgttttccgatacaatatttcta 6823777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 4422049 - 4421989
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| || ||||||||||| || || |||||||||||||||||||| | |||||||||    
T  4422049 attttgatttgtaaaaagttaaatttatcacttttcaccattttccaatgctatatttcta 4421989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 35653340 - 35653280
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| ||| |||||||||| || || |||||||||||||||||||| | |||||||||    
T  35653340 attttgattttcaaaaagttaaatttatcacttttcaccattttccaatgctatatttcta 35653280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 43414149 - 43414089
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| |||||||||||||| || || | |||||||||||||||||| | |||||||||    
T  43414149 attttgatttttaaaaagttaaattgatcatttttcaccattttccaatgctatatttcta 43414089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 22886 - 22810
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaaacaggaac 188  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||| |||| |||||||||||||||||    
T  22886 gaaaaagccaaaatgaaattatataacaatacagtccctagagcacaaggtgtgtcatacagactacaaacaggaac 22810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 11316983 - 11317048
Alignment:
Q  31 caataatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttc 95  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  11316983 caataatattttgacttttaaaaagttaaattcataacttttcaccattttccaaaacaatatttc 11317048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 32004449 - 32004516
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    ||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  32004449 aaaaagccaaaataaaattatataacaatgcagtccctagagcacaacgtgtgccatagagactacaa 32004516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 13447948 - 13448014
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactaca 179  Q
    |||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||    
T  13447948 aaaacgccaaaatgaaattatataccaatgcagtccctaaagcacaaggtgtgccatagagactaca 13448014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 52570803 - 52570866
Alignment:
Q  35 aatattttgacttttaaaaagtta-attcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||||| |||||||||    
T  52570803 aatattttgacttttaaaaagttatatttatcacttttcaccattttccaatactatatttcta 52570866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 38542885 - 38542823
Alignment:
Q  116 aagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||| ||||||||||||| |||| | ||||||||||||||||||| ||||||||||    
T  38542885 aagccaaaatggaattatataacaaagcagtccctagagcacaaggtgtgccttagagactac 38542823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 34060854 - 34060794
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  34060854 aatattttaacttttaaaaagttaaattcatcacttttcaccatttttcaatacaatattt 34060794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 30168020 - 30167954
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    |||||||||||||||| |||||||||||| |||| | ||| ||||||||||||||| |||| |||||    
T  30168020 gaaaaagccaaaatgagattatataacaaagcagtccctaaagcacaaggtgtgccttagaaactac 30167954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 8715586 - 8715526
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || |||||||||||||||||||| | |||||||||    
T  8715586 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttcta 8715526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 9067473 - 9067413
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || |||||||||||||||||||| | |||||||||    
T  9067473 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatatttcta 9067413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 51817400 - 51817340
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||||||| | ||||||    
T  51817400 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatattt 51817340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 39436482 - 39436549
Alignment:
Q  31 caataatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| || |||||||||||||||||| ||| | | ||||||||||||| ||||||||||||||||    
T  39436482 caataatgttctgacttttaaaaagttaaattctttatttttcaccatttttcaatacaatatttcta 39436549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 49976229 - 49976166
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||| |||||    
T  49976229 aatattttgacttttaaaaagttaaattcatcacttttcaccattagtcaatacaataattcta 49976166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 29915660 - 29915603
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||| |||| |||| |||| ||||||||||||||| ||||||    
T  29915660 attttgacttttaaaaagttaaatttataattttttaccattttccaatactatattt 29915603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 29964813 - 29964756
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||| |||| |||| |||| ||||||||||||||| ||||||    
T  29964813 attttgacttttaaaaagttaaatttataattttttaccattttccaatactatattt 29964756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 36730238 - 36730181
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||| |||| || ||||||||||||||| |||||| ||||||    
T  36730238 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatattt 36730181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 4759935 - 4759875
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || ||||||||||||||| |||| | |||||||||    
T  4759935 attttgacttttaaaaagttaaatttatcacttttcaccatttttcaatgctatatttcta 4759875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 45899632 - 45899568
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataactttt-caccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| ||||| |||||| || |||||||||||| ||||||||||    
T  45899632 aatattttgacttttaaaaatttaaattcatcactttttcatcattttccaatataatatttcta 45899568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 18875 - 18812
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| | |||||||||||||| ||||| |||||||||| ||| ||||| |||||||||||    
T  18875 aatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttcta 18812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 19016 - 18953
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| | |||||||||||||| ||||| |||||||||| ||| ||||| |||||||||||    
T  19016 aatattttaatttttaaaaagttaaattcatcacttttcaccgtttcccaatgcaatatttcta 18953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 37509132 - 37509183
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    ||||||||||||||||||||||| |||| || ||||||||| ||||||||||    
T  37509132 aatattttgacttttaaaaagttaaatttatcacttttcactattttccaat 37509183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 51256157 - 51256106
Alignment:
Q  39 ttttgacttttaaaaagttaattcataacttttcaccattttccaatacaat 90  Q
    |||||||||||||||||||||||| | |||||||| | ||| ||||||||||    
T  51256157 ttttgacttttaaaaagttaattcttcacttttcatcgtttcccaatacaat 51256106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 25102409 - 25102347
Alignment:
Q  35 aatattttgacttttaaaaagttaattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| ||||| ||||| |||||| || |||||| ||||||||||||| | |||||||||    
T  25102409 aatattttaactttaaaaaaattaatttatcactttttaccattttccaatgctatatttcta 25102347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 26850583 - 26850522
Alignment:
Q  34 taatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||| ||||||||||| || ||||||| |||||| ||||||||| |||| |||||||    
T  26850583 taatattttaacttttaaaaaattaaattcatcactttttaccattttctaatataatattt 26850522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 10854883 - 10854943
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||| |||||||||||||||| || || | |||||||||||||||||| | |||||||||    
T  10854883 attttaacttttaaaaagttaaatttattagttttcaccattttccaatgctatatttcta 10854943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 32415593 - 32415653
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || ||||||||| ||||| |||| | |||||||||    
T  32415593 attttgacttttaaaaagttaaatttatgacttttcacaatttttcaatgctatatttcta 32415653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 44570471 - 44570423
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||| || | || ||||||||||||||||||||    
T  44570471 attttgacttttaaaaagttaaagttatcacttttcaccattttccaat 44570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 33629568 - 33629634
Alignment:
Q  114 aaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||||    
T  33629568 aaaagccaaaatgaaattatataacaatgtagtccctaaagcacaaggtgtgccatagagactacaa 33629634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 1682510 - 1682574
Alignment:
Q  114 aaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||| |||||||||||||||| |||||||||   ||| ||||||||||||||||||||||||||    
T  1682510 aaaagtcaaaatgaaattatatgacaatgcagtgcctaaagcacaaggtgtgccatagagactac 1682574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 7875269 - 7875206
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || |||||||| ||||||||||| | |||||||||    
T  7875269 aatattttgacttttaaaaagttaaatttatcacttttcatcattttccaatgctatatttcta 7875206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 27127595 - 27127532
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||| ||||||||||||||||||| ||||| | ||||||||||||  ||||||||||||||||    
T  27127595 aatatcttgacttttaaaaagttaaattcatcatttttcaccatttctcaatacaatatttcta 27127532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 28998956 - 28999015
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||| | ||||||    
T  28998956 ttttgacttttaaaaagttgaaatcacaacttttcaccattttccaatacattttttcta 28999015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 29692426 - 29692366
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||| |||||||||||| || || ||||||||||||||| |||||| |||||||||    
T  29692426 attttgactcttaaaaagttaaatttatcacttttcaccatttttcaatactatatttcta 29692366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 7880515 - 7880452
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||| |||| || |||||||| ||||||| ||| | |||||||||    
T  7880515 aatattttgacttttaaaaagttaaatttatcacttttcatcattttctaatgctatatttcta 7880452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 28014656 - 28014719
Alignment:
Q  35 aatattttgacttttaaaaagttaat-tcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| ||||||||||||| ||  |||| | |||||||||||| |||||||||||||||||    
T  28014656 aatattttaacttttaaaaagtcaaactcatcatttttcaccatttcccaatacaatatttcta 28014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 21186109 - 21186059
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccatttt 80  Q
    |||||||||||| |||||||||||||| ||||||| |||||| ||||||||    
T  21186109 caataatattttaacttttaaaaagttaaattcatcactttttaccatttt 21186059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 31220419 - 31220354
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttc 95  Q
    |||||| ||||| |||||||||||||| ||||||| |||||| |||||||| ||| || |||||||    
T  31220419 caataacattttaacttttaaaaagttaaattcatcactttttaccatttttcaaaacgatatttc 31220354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 10855456 - 10855516
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| |||| || |||||||| |||||| |||||  |||||||||    
T  10855456 attttgacttttaaaaagttaaatttatcacttttcatcatttttcaatattatatttcta 10855516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 12191517 - 12191577
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||| |||| || || |||||||||||||| ||||| | |||||||||    
T  12191517 attttgacttttaaaaaattaaatttatcacttttcaccatttaccaatgctatatttcta 12191577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 14232575 - 14232519
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||| ||||| ||| ||||| ||||||||||||||| |||| ||||||||    
T  14232575 ttttgacttttgaaaagctaaattcatcacttttcaccatttttcaattcaatattt 14232519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 19402686 - 19402751
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||| |||||||||||| |||| | ||||||||||||||||||| ||||||||||    
T  19402686 aaaaagccaaaatgagattatataacaaagcagtccctagagcacaaggtgtgccttagagactac 19402751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 42222242 - 42222305
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||||| || || |||||||||||||||||||||| |||||||||    
T  42222242 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaataccatatttcta 42222305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 5240424 - 5240357
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||| |||||||||||||||||||| |||| || ||||||||||||||| |||||| |||||||||    
T  5240424 caataacattttgacttttaaaaagttaaatttatcacttttcaccatttttcaatactatatttcta 5240357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 15654376 - 15654314
Alignment:
Q  116 aagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    |||||||||||| |||||||||||| |||| | ||||||||||||||||| | ||||||||||    
T  15654376 aagccaaaatgagattatataacaaagcagtccctagagcacaaggtgtgtcttagagactac 15654314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 21277724 - 21277659
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||| |||| |||||    
T  21277724 gaaaaagccaaaatgaaat-atataacaaagcagtccctagagcacaaggtgtgccttagacactac 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 29034711 - 29034768
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||||| || || |||||||||||||||||||||| ||||||    
T  29034711 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatactatattt 29034768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 9534139 - 9534191
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgt 164  Q
    ||||||||||||||||||||||||||||||  || | ||||||||||||||||    
T  9534139 gaaaaagccaaaatgaaattatataacaatatagtccctagagcacaaggtgt 9534191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 43567591 - 43567531
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || |||||||||||||||||||||| ||| |||||    
T  43567591 attttgacttttaaaaagttaaatttatcacttttcaccattttccaatactataattcta 43567531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 32204203 - 32204266
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| |||||||||||||||| ||||| |||||||| |||||| |||| |||||||||||    
T  32204203 aatattttaacttttaaaaagttaaattcatcacttttcatcatttttcaatgcaatatttcta 32204266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 42552559 - 42552500
Alignment:
Q  35 aatattttgacttttaaaaagttaattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||||||||||||| | |||| || ||||| ||| |||||||||    
T  42552559 aatattttgacttttaaaaagttaattcattattttttactatttttcaacacaatattt 42552500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 30388752 - 30388695
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatac 87  Q
    ||||||||||||||||||||||||||| |||| || | ||||||||||||| ||||||    
T  30388752 caataatattttgacttttaaaaagttaaatttatcatttttcaccatttttcaatac 30388695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 8292769 - 8292829
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||  || || ||||||||||||||||||||||| | |||||||||    
T  8292769 attttgacttttaaaaaggcaaatttataacttttcaccattttccaatgctatatttcta 8292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 27053581 - 27053534
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttc 81  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||    
T  27053581 aatattttgacttttaaaaagttaaatttatcacttttcaccattttc 27053534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 29687500 - 29687547
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaa 84  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  29687500 attttaacttttaaaaagttaaattcatcacttttcaccattttccaa 29687547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 40774330 - 40774267
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| |||||||||||||| ||||||| | |||||| |||||| |||| |||||||||||    
T  40774330 aatattttaacttttaaaaagttaaattcatcaattttcatcatttttcaatgcaatatttcta 40774267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 41141049 - 41141108
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||| |||||||||||||| || | |||||||||||||||||||||||| | ||||||    
T  41141049 ttttgatttttaaaaagttaaattaacaacttttcaccattttccaatacattttttcta 41141108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 49069576 - 49069639
Alignment:
Q  35 aatattttgacttttaaaaagtta-attcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||| |||| ||||||||||||| ||| || ||||||||||||||| |||||| |||||||||    
T  49069576 aatatattgatttttaaaaagttagatttatcacttttcaccatttttcaatactatatttcta 49069639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 29247948 - 29247994
Alignment:
Q  39 ttttgacttttaaaaagttaattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||||||| | |||||||| | |||||||||    
T  29247948 ttttgacttttaaaaagttaattcttcacttttcatcgttttccaat 29247994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 8380465 - 8380522
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||| |||| || |||||||| ||||||||||| | ||||||    
T  8380465 attttgacttttaaaaagttaaatttatcacttttcatcattttccaatgctatattt 8380522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 36279143 - 36279200
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    ||||||| |||||||||||||| || || |||||||||||||||||||| | ||||||    
T  36279143 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatgctatattt 36279200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 41188871 - 41188814
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||| |||| || || ||||||||||||||||| | ||||||    
T  41188871 attttgacttttaaaaagttaaatttatcacctttcaccattttccaatgctatattt 41188814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 3681718 - 3681766
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaat 85  Q
    ||||| |||||||||||||||| || || ||||||||||||||||||||    
T  3681718 attttaacttttaaaaagttaaatttatcacttttcaccattttccaat 3681766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 5348057 - 5348009
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||| |||| || |||||||| |||||||||||    
T  5348057 attttgacttttaaaaagttaaatttatcacttttcatcattttccaat 5348009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 43958172 - 43958108
Alignment:
Q  34 taatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||| || |||| || | ||||||| |||||| ||||| |||||||||    
T  43958172 taatattttgacttttaaaaaattaaatttatcatttttcacaattttctaatactatatttcta 43958108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 44391015 - 44391079
Alignment:
Q  34 taatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||| ||||||||||||| || ||||||| |||| || |||||| ||| |||||||||||    
T  44391015 taatattttaacttttaaaaagtcaaattcataattttttacaattttctaatgcaatatttcta 44391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 46042772 - 46042831
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||| |||||| |||||||||| || |||||||||||||||||| |||||| |||||||||    
T  46042772 atttagactttaaaaaagttaaatttataacttttcaccatttt-caatactatatttcta 46042831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 48454907 - 48454859
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||| |||| || |||||||||||||| |||||    
T  48454907 attttgacttttaaaaagttaaatttatcacttttcaccatttcccaat 48454859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 19385382 - 19385314
Alignment:
Q  112 gaaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactacaa 180  Q
    ||||||||| |||||||||||||||||||| ||| | ||| |||| |||||||||||||||||||||||    
T  19385382 gaaaaagccgaaatgaaattatataacaatacagtccctaaagcataaggtgtgccatagagactacaa 19385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 19389397 - 19389335
Alignment:
Q  36 atattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||||| || || ||||||||| |||||||||||| |||||||||    
T  19389397 atattttgacttttaaaaagttaaatttatcacttttcacaattttccaatactatatttcta 19389335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 3174483 - 3174544
Alignment:
Q  37 tattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||| || || |||| ||||||||||||||||||| ||||||||||    
T  3174483 tattttgacttttaaaaagtcaaatttataatttttcaccattttccaatataatatttcta 3174544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 7451820 - 7451884
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    |||||||||||||||||| ||||||||| |||| | |||||||||||| |||||| ||||||||||    
T  7451820 aaaaagccaaaatgaaat-atataacaaagcagtccctagagcacaagctgtgccttagagactac 7451884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 25249429 - 25249369
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||||||||||||||| |||| || |||||||||||||||||||| | ||||||    
T  25249429 aatattttgacttttaaaaagttaaatttatcacttttcaccattttccaatgctatattt 25249369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 7532830 - 7532869
Alignment:
Q  58 aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7532830 aattcatcacttttcaccattttccaatacaatatttcta 7532869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 8018785 - 8018845
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| |||||||||||||| || || |||||||||||||||||||||  |||||||||    
T  8018785 attttgatttttaaaaagttaaatttatcacttttcaccattttccaatattatatttcta 8018845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 12531249 - 12531185
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagacta 177  Q
    ||||||||||||| | |||||||||||| |||| | |||||||| |||||||||| |||| ||||    
T  12531249 aaaaagccaaaataagattatataacaaagcagtccctagagcataaggtgtgccttagaaacta 12531185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 18068986 - 18069046
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||| ||||||||||||| || || |||||||||||||||||||| | |||||||||    
T  18068986 attttgacctttaaaaagttaaatttatcacttttcaccattttccaatgctatatttcta 18069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 21016258 - 21016318
Alignment:
Q  38 attttgacttttaaaaagttaattc-ataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || ||||||||||||||| |||||  |||||||||    
T  21016258 attttgacttttaaaaagttaaatctatcacttttcaccatttttcaatattatatttcta 21016318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 11332878 - 11332819
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||  ||||||||||||||||    
T  11332878 ttttgacttttaaaaagttaaattcttcactttacaccatttctcaatacaatatttcta 11332819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 31596509 - 31596446
Alignment:
Q  35 aatattttgacttttaaaaagt-taattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||  || ||||||||||||    
T  31596509 aatattttgacttttaaaaagtaaaattcatcatttttcaccattttttaacacaatatttcta 31596446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 38870025 - 38870088
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| ||| ||||| | |||||||| ||||||||||| |||| ||||||    
T  38870025 aatattttgacttttaaaatgttgaattcttcacttttcatcattttccaatgcaatgtttcta 38870088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 39972236 - 39972177
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||| ||||||||||||| || ||||| |||||||||||||| ||||||||| |||||||    
T  39972236 ttttaacttttaaaaagtcaaattcatcacttttcaccatttcccaatacaacatttcta 39972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 6841779 - 6841721
Alignment:
Q  40 tttgacttttaaaaagtta-attcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||| ||||||||||||| || ||| |||||||| ||||||| |||||||||||||||    
T  6841779 tttgatttttaaaaagttatatacatcacttttcatcattttctaatacaatatttcta 6841721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 8810514 - 8810580
Alignment:
Q  29 tacaataatattttgacttttaaaaagttaattc-ataacttttcaccattttccaatacaatattt 94  Q
    ||||||||| |||| | |||||||||||||| || || |||||||||||||| ||||||||| ||||    
T  8810514 tacaataattttttaatttttaaaaagttaaatctattacttttcaccatttcccaatacaacattt 8810580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 6433565 - 6433625
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    |||||||| |||||||||||||| |||| ||||||||| |||||||| |||| | ||||||    
T  6433565 aatattttaacttttaaaaagttaaatttataactttttaccatttttcaatgctatattt 6433625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 20169305 - 20169369
Alignment:
Q  34 taatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||| ||||||||||||| || ||||||| |||| || |||||| ||| |||||||||||    
T  20169305 taatattttaacttttaaaaagtcaaattcataattttttacaattttctaatgcaatatttcta 20169369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 862613 - 862673
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||| |||||||||||| || || |||||||||||||||||||||| |||||||||    
T  862613 attttgactcttaaaaagttaaatttatcacttttcaccattttccaatactatatttcta 862673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 6999226 - 6999286
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||||||||| || || | |||||||||||||||||||| |||||||||    
T  6999226 attttgacttttaaaaagttaaatttatcatttttcaccattttccaatactatatttcta 6999286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 2958548 - 2958497
Alignment:
Q  44 acttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  2958548 acttttaaaaagttaaattcataacttttcaccactttccaacacaatattt 2958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 10522816 - 10522875
Alignment:
Q  39 ttttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    |||| |||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  10522816 tttttacttttgaaaagttaaattcacaacttttcaccattttccaatacaatttttcta 10522875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 45420990 - 45421049
Alignment:
Q  119 ccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||| |||||||||||| |||| | ||| ||||||||||||||| ||||||||||    
T  45420990 ccaaaatgagattatataacaaagcagtccctaaagcacaaggtgtgccttagagactac 45421049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 2210000 - 2209950
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaataca 88  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||    
T  2210000 ttttgacttttcaaaagttgaattcataactttttaccattttccaataca 2209950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 23685744 - 23685688
Alignment:
Q  31 caataatattttgacttttaaaaagtt-aattcataacttttcaccattttccaata 86  Q
    |||||| |||||||||||||||||||| |||| || ||||||| |||||||||||||    
T  23685744 caataacattttgacttttaaaaagttaaatttatcacttttccccattttccaata 23685688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 33864376 - 33864436
Alignment:
Q  35 aatattttgacttttaaaaagtt-aattcataacttttcaccattttccaatacaatattt 94  Q
    ||||||||||||||||||| ||| |||| || |||||||||||||||||||| | ||||||    
T  33864376 aatattttgacttttaaaatgttaaatttattacttttcaccattttccaatgcgatattt 33864436  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 747575 - 747516
Alignment:
Q  39 ttttgacttttaaaaagttaattc-ataacttttcaccattttccaatacaatatttcta 97  Q
    |||| |||||||||||||||| || || ||||||||| |||||||||||||| |||||||    
T  747575 ttttaacttttaaaaagttaaatctatcacttttcactattttccaatacaacatttcta 747516  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 37230253 - 37230304
Alignment:
Q  47 tttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||| || || ||||||||||||||| ||||||||||||||||    
T  37230253 tttaaaaagttaagtttatcacttttcaccatttttcaatacaatatttcta 37230304  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 39401619 - 39401572
Alignment:
Q  38 attttgacttttaaaaagttaattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  39401619 attttgacttttaaaaagttaaattatcacttttcaccatttttcaat 39401572  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 41890183 - 41890144
Alignment:
Q  58 aattcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  41890183 aattcatcacttttcatcattttccaatacaatatttcta 41890144  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 9965140 - 9965098
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattt 79  Q
    |||||||||||||||||||| ||||||||| ||||||||||||    
T  9965140 attttgacttttaaaaagttaaattcataatttttcaccattt 9965098  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 41436502 - 41436559
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||||| || || |||||||| |||||| |||||| ||||||    
T  41436502 attttgacttttaaaaagttaagtttatcacttttcatcatttttcaatactatattt 41436559  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 765235 - 765187
Alignment:
Q  38 attttgacttttaaaaagtt-aattcataacttttcaccattttccaat 85  Q
    |||||||||||||||||||| |||| || ||||||||| ||||||||||    
T  765235 attttgacttttaaaaagttaaatttatcacttttcacaattttccaat 765187  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 2966564 - 2966612
Alignment:
Q  38 attttgacttttaaaaagttaa-ttcataacttttcaccattttccaat 85  Q
    ||||||||||||||||| |||| || || ||||||||||||||||||||    
T  2966564 attttgacttttaaaaaattaaatttatcacttttcaccattttccaat 2966612  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 11659283 - 11659343
Alignment:
Q  35 aatattttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatattt 94  Q
    |||||||| | |||||||||||||| ||| | ||||||||| ||||| |||||||||||||    
T  11659283 aatattttaatttttaaaaagttaaattcttcacttttcactatttttcaatacaatattt 11659343  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 31911221 - 31911193
Alignment:
Q  66 acttttcaccattttccaatacaatattt 94  Q
    |||||||||||||||||||||||||||||    
T  31911221 acttttcaccattttccaatacaatattt 31911193  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 34316381 - 34316349
Alignment:
Q  65 aacttttcaccattttccaatacaatatttcta 97  Q
    |||||||||||||||| ||||||||||||||||    
T  34316381 aacttttcaccatttttcaatacaatatttcta 34316349  T

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Target: scaffold2122 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 702 - 652
Alignment:
Q  39 ttttgacttttaaaaagtt-aattcataacttttcaccattttccaataca 88  Q
    |||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  702 ttttaacttttaaaaagttgaattcacaacttttcaccattttccaataca 652  T

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Target: scaffold0418 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 7141 - 7206
Alignment:
Q  113 aaaaagccaaaatgaaattatataacaatgcagcctctagagcacaaggtgtgccatagagactac 178  Q
    ||||||||||||||| |||||||||||| |||  | ||| |||| |||||||||| ||||||||||    
T  7141 aaaaagccaaaatgagattatataacaaagcaatccctaaagcataaggtgtgccttagagactac 7206  T

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Target: scaffold0144 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 39614 - 39671
Alignment:
Q  41 ttgacttttaaaaagttaa-ttcataacttttcaccattttccaatacaatatttcta 97  Q
    ||||||||||||||||||| ||| | | ||||||| ||||||||||||||| ||||||    
T  39614 ttgacttttaaaaagttaaattcttcagttttcactattttccaatacaatgtttcta 39671  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 73469 - 73521
Alignment:
Q  44 acttttaaaaagtt-aattcataacttttcaccattttccaatacaatatttc 95  Q
    |||||||||||||| |||||||||||||| | || ||||||| ||||||||||    
T  73469 acttttaaaaagttgaattcataactttttatcactttccaacacaatatttc 73521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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