View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2386_low_2 (Length: 477)
Name: NF2386_low_2
Description: NF2386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2386_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 18486964 - 18486497
Alignment:
| Q |
1 |
gagaccaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccat |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18486964 |
gagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatccaa |
18486865 |
T |
|
| Q |
101 |
ccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatg |
200 |
Q |
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| T |
18486864 |
ccatctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatg |
18486765 |
T |
|
| Q |
201 |
ttatggaaacattaatagacaattaaatacatattattt--------tgacaaatattgataaaatattcacctgtaattggtcgtttttggttgaagaa |
292 |
Q |
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| T |
18486764 |
ttatggaaacattaatagacaattaaatacatattattttgaaaatgtgacaaatattgataaaatattcacctgtaattggttgtttttggttgaagaa |
18486665 |
T |
|
| Q |
293 |
gttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagc |
392 |
Q |
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| T |
18486664 |
gttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagc |
18486565 |
T |
|
| Q |
393 |
ttgaggttttgatcaaattggaagccatgcttgctcagttactcttggagtttgagcaatgtgctatg |
460 |
Q |
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| T |
18486564 |
ttgaggttttgatcaaattggaagccatgcttgctcagttgatcttggagtttgagcaatgtgctatg |
18486497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 18513313 - 18512907
Alignment:
| Q |
1 |
gagaccaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
18513313 |
gagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaa |
18513214 |
T |
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| Q |
101 |
ccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatg |
200 |
Q |
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| T |
18513213 |
ccatctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatg |
18513114 |
T |
|
| Q |
201 |
ttatggaaacattaatagacaattaaatacatattattttga--------caaatattgataaaatattcacctgtaattggtcgtttttggttgaagaa |
292 |
Q |
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| T |
18513113 |
ttatggaaacattaatagataattaaatacatattattttgaaaatgtggcaaatattgataaaatattcacctgtaattggttgtttttggttgaagaa |
18513014 |
T |
|
| Q |
293 |
gttgaagatgcagcagaaggaatttctagtataactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagc |
392 |
Q |
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| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18513013 |
ggtgaagatgcagaagaaggaatttctagtataactggatctatcggtgagaagtagaagacttgaactgtgagagcaactaaagatgctagcaccaagc |
18512914 |
T |
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| Q |
393 |
ttgaggt |
399 |
Q |
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| T |
18512913 |
ttgaggt |
18512907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 18506815 - 18506626
Alignment:
| Q |
1 |
gagaccaccatctttagatgtagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
18506815 |
gagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaa |
18506716 |
T |
|
| Q |
101 |
ccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
190 |
Q |
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| T |
18506715 |
ccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 400
Target Start/End: Complemental strand, 18506457 - 18506382
Alignment:
| Q |
325 |
aactggatctatgggtgagaagtagaagacttgaactgtgagagcaactaaagctgctagcaccaagcttgaggtt |
400 |
Q |
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| T |
18506457 |
aactggatctatgggtgaaaagtagaagacttgaactgtgagagcaactaaagctgctagtaccaagcttgaggtt |
18506382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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