View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_high_1 (Length: 670)
Name: NF2387_high_1
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 252 - 572
Target Start/End: Original strand, 24112399 - 24112716
Alignment:
| Q |
252 |
caaatattctctaattaaggttcagcaacagaaacttaaattgaaatgaaaatgatttaatcaatggaagatgaatcagaaagaacgtagcgataatttt |
351 |
Q |
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| T |
24112399 |
caaatattctctaattaaggttcagagacagaaacttaaattgaaatgaaaatgattaaatcaatggaagatgaatcagaaagaacgtagcgataatttt |
24112498 |
T |
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| Q |
352 |
tgttcgatcatatcaaatacttttgtatttgattttcagatatctttcattannnnnnncatcatattcatctcccagtaacaacaacagagaaaaacaa |
451 |
Q |
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| T |
24112499 |
-gttcgatcatatcaaatacaaa-gtatttgattttcagatatctttcattatttttttcatcatattcatcttccattaacaacaacagagaaaaacaa |
24112596 |
T |
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| Q |
452 |
taaaaagtttatacttaatatcctataagtttggatctcagtaaactaaattctcctcaaatcctctagtgaggtttcagatagataacgcagtattaaa |
551 |
Q |
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| T |
24112597 |
aaacaagtttatactta-tatcctataactttggatctcagtaaactaaattctcctcaaatcctctagtgaggtttcagatagataacgcagtattaaa |
24112695 |
T |
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| Q |
552 |
taacatcacagatccatagat |
572 |
Q |
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| T |
24112696 |
taacatcacagatccatagat |
24112716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 24112008 - 24112231
Alignment:
| Q |
17 |
acttgtcatggtcatcataatcttcttaacgagcttcatactggacaatgcgacgggtgcgcttcttgtaaaggattctgtaaccacaatcccggcactg |
116 |
Q |
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| T |
24112008 |
acttgtcatggtcctcataatcttcttaacgagcttcatactggacaatgcgacgggtacgcttcttgtaaaggattctgtaaccacaatcccggcactg |
24112107 |
T |
|
| Q |
117 |
aataacatcacctgacttcagggtattctccactccacagtcaccacagaggtaactcacaggctcaggcagaggatccatcactggttcaaaaaaccat |
216 |
Q |
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| T |
24112108 |
aataacatcgcctgacttcagtgtattctccactccacagtcaccacagaggtaactcacaggctcaggcagaggatccatcactggttcaaaaaaccat |
24112207 |
T |
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| Q |
217 |
ccagaaaatattaatacctttaca |
240 |
Q |
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| T |
24112208 |
ccagaaaatattaatatctttaca |
24112231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 24110422 - 24110498
Alignment:
| Q |
17 |
acttgtcatggtcatcataatcttcttaacgagcttcatactggacaatgcgacgggtgcgcttcttgtaaaggatt |
93 |
Q |
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| T |
24110422 |
acttgtcaaggtcctcacaatcttcttaacgtgcctcgtactggagaacgcgatgcgtgcgcttcttgtaaaggatt |
24110498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 24112769 - 24112805
Alignment:
| Q |
625 |
gagcatctcagagtaaataattccccatgattttcttc |
662 |
Q |
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| T |
24112769 |
gagcatctcagagtaa-taattccccatgattttcttc |
24112805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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