View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2387_high_11 (Length: 272)

Name: NF2387_high_11
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2387_high_11
NF2387_high_11
[»] chr6 (3 HSPs)
chr6 (10-256)||(14589000-14589246)
chr6 (10-256)||(14622658-14622904)
chr6 (35-256)||(12846555-12846776)
[»] chr4 (2 HSPs)
chr4 (10-256)||(51369630-51369876)
chr4 (16-256)||(29954577-29954817)
[»] chr3 (1 HSPs)
chr3 (16-256)||(11531890-11532130)
[»] chr2 (4 HSPs)
chr2 (16-256)||(20492712-20492952)
chr2 (52-256)||(1355041-1355245)
chr2 (52-251)||(1361932-1362131)
chr2 (43-100)||(1357984-1358041)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 14589246 - 14589000
Alignment:
Q  10 aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589246 aagaacatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt 14589147  T
Q  110 acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14589146 acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga 14589047  T
Q  210 atggtaacctagaaagctcaattccatgagctaactcagttatatct 256  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  14589046 acggtaacctagaaagctcaattccatgagctaactcagttatatct 14589000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 14622904 - 14622658
Alignment:
Q  10 aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt 109  Q
    ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  14622904 aagaacatgcccaagatgaagcatttcaatgactgaactgggaccacaatgagtcatacaaccactaattgattcatgagttaagatcttaaactggggt 14622805  T
Q  110 acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14622804 gcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga 14622705  T
Q  210 atggtaacctagaaagctcaattccatgagctaactcagttatatct 256  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  14622704 acggtaacctagaaagctcaattccatgagctaactcagttatatct 14622658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 12846776 - 12846555
Alignment:
Q  35 tcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgc 134  Q
    |||| |||||||| || |||||||||| ||||||| || ||||||| |||||| | ||||||||||| ||||||| |||| ||||||||||||||||| |    
T  12846776 tcaatgactgaacctgaaccacaatgactcatacaccccccaattgctccatgggataagatcttaagctggggtgcccatgttttccaaacaattccac 12846677  T
Q  135 gttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattcc 234  Q
    ||||||| ||||  || ||||| |||||||| || ||||||  ||||| ||| || | ||| |||||||||||||| |||||||||||||||||||||||    
T  12846676 gttctttggttcgatcttcgaatcctttaggtaactcaagtgtacccttttttaggtttttcaaagcccaaaagaaaggtaacctagaaagctcaattcc 12846577  T
Q  235 atgagctaactcagttatatct 256  Q
    ||||||||| || |||| ||||    
T  12846576 atgagctaattcggttagatct 12846555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 256
Target Start/End: Original strand, 51369630 - 51369876
Alignment:
Q  10 aagaatatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggt 109  Q
    ||||| ||||||||||| |||||| |||| ||||||||||  |||||| ||| ||||||| ||||||||||||  ||||| |||||| || | |||||||    
T  51369630 aagaacatgcccaagatgaagcatctcaacgactgaacttccaccacagtgactcatacatccaccaattgatggatgagctaagattttgatctggggt 51369729  T
Q  110 acccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaaga 209  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||  |||||| |||||| ||||||| |||||||||||||    
T  51369730 acccaggttttccaaacaattccacgttcttttgttctttcctcgaatccttgaggtaattcagatacaccgtctttacgatctttcaaagcccaaaaga 51369829  T
Q  210 atggtaacctagaaagctcaattccatgagctaactcagttatatct 256  Q
    | ||||||| |||||| ||||||||||||||||||||||||| ||||    
T  51369830 aaggtaacccagaaagttcaattccatgagctaactcagttaaatct 51369876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 29954817 - 29954577
Alignment:
Q  16 atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa 115  Q
    |||||||| || |||| | |||| |||||||| || |||||||||| ||||||| ||||||||||||||||||| |||||||||||  || ||| ||||     
T  29954817 atgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatcttaagttgaggtgcccat 29954718  T
Q  116 gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta 215  Q
    ||||||||||| ||||| | |||||||||||||||||| || |||||||| |||||||||  |||||||||||||| ||| |||||||||||||| || |    
T  29954717 gttttccaaacgattccacattcttttgttctttcctcaaatcctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggca 29954618  T
Q  216 acctagaaagctcaattccatgagctaactcagttatatct 256  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  29954617 acctagaaagctcaattccatgcgctaactcagttagatct 29954577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 11532130 - 11531890
Alignment:
Q  16 atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa 115  Q
    |||||||| || |||| | |||| |||||||| || |||||| ||| ||||||| ||||| ||||||||||| | |||||||||||  || ||| ||||     
T  11532130 atgcccaaaatgaagcttctcaatgactgaacctgaaccacagtgactcatacatccaccgattgatccatgtgctaagatcttaagttgtggtgcccat 11532031  T
Q  116 gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta 215  Q
    ||||||||||||||||| |||||||||||||||||||| ||  ||||||| |||||||||  |||||||||||||| ||| |||||||||||||| || |    
T  11532030 gttttccaaacaattccacgttcttttgttctttcctcaaattctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggca 11531931  T
Q  216 acctagaaagctcaattccatgagctaactcagttatatct 256  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  11531930 acctagaaagctcaattccatgagctaactcaattagatct 11531890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 20492952 - 20492712
Alignment:
Q  16 atgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaa 115  Q
    |||||||| || |||| | |||| |||||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||| | ||| ||| ||||     
T  20492952 atgcccaaaatgaagcttctcaatgactgaacctgaaccacaatgactcatacatccaccaattgatccatgagctaagatctttagctgtggtgcccat 20492853  T
Q  116 gttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggta 215  Q
    ||||||||||| |||||   ||||||||||||||| || || ||||  || |||||||||  ||| |||||||| | ||| |||||||||||||| ||||    
T  20492852 gttttccaaacgattccatattcttttgttctttcttcaaatccttcgggtaattcaagtgtaccttctttaaggtttttcaaagcccaaaagaaaggta 20492753  T
Q  216 acctagaaagctcaattccatgagctaactcagttatatct 256  Q
    |||||||  ||||||||||||||||||||||||||| ||||    
T  20492752 acctagattgctcaattccatgagctaactcagttagatct 20492712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 256
Target Start/End: Complemental strand, 1355245 - 1355041
Alignment:
Q  52 accacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcc 151  Q
    |||||||||| ||||||| |||||||||| |||||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||||| || ||||||    
T  1355245 accacaatgactcatacatccaccaattgctccatgagctaagatcttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgtcctttcc 1355146  T
Q  152 tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattccatgagctaactcagtta 251  Q
    ||||| |||| ||| |||||||||  ||||||||| ||||  || |||| ||||||||| |  |||| ||||||||||||||||| ||| ||||||||||    
T  1355145 tcgaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaagacaacccagaaagctcaattccataagccaactcagtta 1355046  T
Q  252 tatct 256  Q
     ||||    
T  1355045 aatct 1355041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 52 - 251
Target Start/End: Complemental strand, 1362131 - 1361932
Alignment:
Q  52 accacaatgagtcatacaaccaccaattgatccatgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcc 151  Q
    |||||| ||| ||||||| |||||||||| |||||||| |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| |||||||||    
T  1362131 accacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcc 1362032  T
Q  152 tcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaatggtaacctagaaagctcaattccatgagctaactcagtta 251  Q
    || || |||| ||| |||||||||  ||||||||| ||||  || |||||||||||||| |  |||| ||||||||||||||||||||| ||||||||||    
T  1362031 tcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagtta 1361932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 1358041 - 1357984
Alignment:
Q  43 tgaacttggaccacaatgagtcatacaaccaccaattgatccatgagttaagatctta 100  Q
    ||||| || |||||||||||||| ||||||||||| ||| ||||||  ||||||||||    
T  1358041 tgaacctgaaccacaatgagtcaaacaaccaccaactgaaccatgacctaagatctta 1357984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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