View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2387_high_13 (Length: 251)

Name: NF2387_high_13
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2387_high_13
NF2387_high_13
[»] chr5 (8 HSPs)
chr5 (19-251)||(36436698-36436930)
chr5 (55-251)||(36446096-36446303)
chr5 (55-251)||(36468501-36468708)
chr5 (55-251)||(36493444-36493653)
chr5 (55-251)||(36476297-36476506)
chr5 (115-251)||(36412237-36412383)
chr5 (59-182)||(36414325-36414449)
chr5 (94-186)||(36394122-36394217)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 36436698 - 36436930
Alignment:
Q  19 aaaacgctcatgaaaacatatataaagaaacacaatataatatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatca 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36436698 aaaacgctcatgaaaacatatataaagaaacataatataatatatagctcaccctttttagtatcagtggaagtttcagttaagtccctagcggacatca 36436797  T
Q  119 ctgaggaaataagagccatagccaataggcctagcatgaggattgccttttttgaatccattgttcaaatgtgatatttagtagtgaacgatgagaaaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36436798 ctgaggaaataagagccatagccaataggcctagcatgaggattgcctttttcgaatccattgttcaaatgtgatatttagtagtgaacgatgagaaaaa 36436897  T
Q  219 ctagtaagaagtgtactctatatataatggagg 251  Q
    |||||||||||||||||||||||||||||||||    
T  36436898 ctagtaagaagtgtactctatatataatggagg 36436930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 36446096 - 36446303
Alignment:
Q  55 ataatatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatcactgaggaaataagagccatagccaataggcctagca 154  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  36446096 ataatatatagctcaccctttttggcatcagtggaagtttcagttaattccctagcagacatcactgaggaaataagagccatagccaagaggcctagca 36446195  T
Q  155 tgaggattgccttttttgaatcca-----------ttgttcaaatgtgatatttagtagtgaacgatgagaaaaactagtaagaagtgtactctatatat 243  Q
    ||||||||||||||||||||||||           ||||||||||||||||||||||||||||| |||| ||||   |||||||||||| ||||||||||    
T  36446196 tgaggattgccttttttgaatccattgttcaaactttgttcaaatgtgatatttagtagtgaactatgataaaactaagtaagaagtgtgctctatatat 36446295  T
Q  244 aatggagg 251  Q
    ||||||||    
T  36446296 aatggagg 36446303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 36468501 - 36468708
Alignment:
Q  55 ataatatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatcactgaggaaataagagccatagccaataggcctagca 154  Q
    ||||||||||||||||||||||| | |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||    
T  36468501 ataatatatagctcaccctttttggcatcagtggaagtttcagttaagtcccttgcggacatcactgaggaaataagagccatagccaagaggcctagca 36468600  T
Q  155 tgaggattgccttttttgaatccattg-----------ttcaaatgtgatatttagtagtgaacgatgagaaaaactagtaagaagtgtactctatatat 243  Q
    |||||||||||||||||||||||||||           |||||||||||||||||||||||||| |||| ||||   |||||||||||| ||||||||||    
T  36468601 tgaggattgccttttttgaatccattgttcaaactttattcaaatgtgatatttagtagtgaactatgataaaactaagtaagaagtgtgctctatatat 36468700  T
Q  244 aatggagg 251  Q
    ||||||||    
T  36468701 aatggagg 36468708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 36493444 - 36493653
Alignment:
Q  55 ataatatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatcactgaggaaat---aagagccatagccaataggccta 151  Q
    |||||||||| |||||||||||| | |||||  ||||||||||||||||||||||| ||||   ||||||||||   |||| |||||||||| |||||||    
T  36493444 ataatatataactcaccctttttggcatcagaggaagtttcagttaagtccctagcggacacttctgaggaaataagaagaaccatagccaagaggccta 36493543  T
Q  152 gcatgaggattgccttttttgaatccat-----------tgttcaaatgtgatatttagtagtgaacgatgagaaaaactagtaagaagtgtactctata 240  Q
    | ||||||||||||||||| ||||||||           ||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |||||||    
T  36493544 ggatgaggattgcctttttcgaatccattgttcaatatctgttcaaatgtaatatttggtagtgaacgatgag-aaaactagtaagaagtgtgctctata 36493642  T
Q  241 tataatggagg 251  Q
    |||||||||||    
T  36493643 tataatggagg 36493653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 36476297 - 36476506
Alignment:
Q  55 ataatatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatcactgaggaaataagag---ccatagccaataggccta 151  Q
    ||||||||||||| ||||||||| | |||||  | |||||||||||||||||| || || |   |||| |||||||||    |||||||||| |||||||    
T  36476297 ataatatatagctgaccctttttggcatcagaggtagtttcagttaagtccctggctgagacttctgaagaaataagaagaaccatagccaagaggccta 36476396  T
Q  152 gcatgaggattgccttttttgaatccattgtt-----------caaatgtgatatttagtagtgaacgatgagaaaaactagtaagaagtgtactctata 240  Q
    | ||||||||||||||||| ||||||||||||           ||||||| |||||| ||||||||||||||| |||||||||||||||| | |||||||    
T  36476397 ggatgaggattgcctttttcgaatccattgttcaatatctgttcaaatgtaatatttggtagtgaacgatgag-aaaactagtaagaagtatgctctata 36476495  T
Q  241 tataatggagg 251  Q
    |||||||||||    
T  36476496 tataatggagg 36476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 251
Target Start/End: Original strand, 36412237 - 36412383
Alignment:
Q  115 atcactgaggaaataagagccatagccaataggcctagcatgaggattgccttttttgaatccat-----------tgttcaaatgtgatatttagtagt 203  Q
    |||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||||           ||||||||| |||||||| |||||    
T  36412237 atcactgaggaaataagaaccatagccaagaggcctagcataaggattgccttttttgaaaccattgttcaatatctgttcaaatttgatatttggtagt 36412336  T
Q  204 gaacgatgagaaaaactagtaagaagtgtactctatatataatggagg 251  Q
    |||||||||| |||| ||| ||||||||| ||||||||||||||||||    
T  36412337 gaacgatgag-aaaagtagcaagaagtgtgctctatatataatggagg 36412383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 182
Target Start/End: Original strand, 36414325 - 36414449
Alignment:
Q  59 tatatagctcaccctttttagtatcagttgaagtttcagttaagtccctagccgacatcactgaggaaataagagccatagccaataggcctagcatgag 158  Q
    ||||||| |||||| |||| |||| ||  ||||| ||||||||| |||| || || | |   |||||||||||| ||||||| ||||||||||| |||||    
T  36414325 tatatagttcacccgttttggtattagaggaagtctcagttaagaccctcgctgaaaccctagaggaaataagaaccatagcaaataggcctagaatgag 36414424  T
Q  159 gattgc-cttttttgaatccattgt 182  Q
    ||||||  |||||||||||||||||    
T  36414425 gattgcttttttttgaatccattgt 36414449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 36394122 - 36394217
Alignment:
Q  94 tcagttaagtccctagccgacatcactgaggaaataagagccat---agccaataggcctagcatgaggattgccttttttgaatccattgttcaa 186  Q
    |||||||||||||||||||| | | ||||||| ||||||   ||   ||||||||| ||||| || |||||||| ||||| |||||||||||||||    
T  36394122 tcagttaagtccctagccgaaacctctgaggagataagaagaatgatagccaatagacctaggataaggattgcttttttcgaatccattgttcaa 36394217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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