View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2387_high_2 (Length: 636)

Name: NF2387_high_2
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2387_high_2
NF2387_high_2
[»] chr4 (5 HSPs)
chr4 (288-636)||(47075054-47075402)
chr4 (332-631)||(47068933-47069232)
chr4 (19-223)||(47074785-47074989)
chr4 (377-588)||(47086723-47086931)
chr4 (374-414)||(47086556-47086596)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 288 - 636
Target Start/End: Original strand, 47075054 - 47075402
Alignment:
Q  288 gccatatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac 387  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47075054 gccacatgaggaacagctgaaacagttacttttatgcataaccggaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccac 47075153  T
Q  388 acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47075154 acccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatgacttcccaagga 47075253  T
Q  488 acaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgc 587  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47075254 acaagattattcacctgtcccgcaacaaggcacttataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctaggtttcttctgc 47075353  T
Q  588 aacataaaatttcaaacaacattattccatagctataaacatcttcctt 636  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47075354 aacataaaatttcaaacaacattattccatagctataaacatctgcctt 47075402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 332 - 631
Target Start/End: Complemental strand, 47069232 - 47068933
Alignment:
Q  332 gaatctggacaaggaggaattgctatatcagtaactccttctaacatcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacacc 431  Q
    |||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47069232 gaatttggacacggaggaattgctatatcagtaatcccttctaacatcaacaccacacccttcattgttggcctgagaaaagggtcatcttggatacacc 47069133  T
Q  432 aaagtgccactttaaccatattttccatgacattattatcaatgacttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagccca 531  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| ||||  |||||||||| || || || ||||| |||| || ||||||||||| |||    
T  47069132 aaagtgccaccttaaccatattttccatgacatttttatcaatggcttctgaaggaacaagcttgtttacgtctcctgcaataaagcacttataagtcca 47069033  T
Q  532 accagagagaataatctcctcaggttccaacacattaacatctaggtttcttctgcaacataaaatttcaaacaacattattccatagctataaacatct 631  Q
    |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||    
T  47069032 accagcaagaagaatctcctcaggttccaacacattaacatctaggtttcttctgcaacataagatttccaacagcactattccatagctataaacatct 47068933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 47074785 - 47074989
Alignment:
Q  19 aaggcaaaccttaacgatgggaaggatattttgtaaacctttagtcaaatgaaaataagatttaacaatgatatttccctttattctttgttgttgacat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47074785 aaggcaaaccttaacgatgggaaggatattttgtaaacctttagtcaaatgaaaataagatttaacaatgatatttccctttattctttgttgttgacat 47074884  T
Q  119 aacaaaaccaattagcnnnnnnngctgctaagttgtaacatgaattggcatgaggaataactacattcattttttgcctgcttccttattttagacacaa 218  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  47074885 aacaaaaccaattagctttttttgctgctaagttgtaacatgaattggcatgaggaataactacattcattttttgcctgcttccttattttagacacag 47074984  T
Q  219 cagag 223  Q
    |||||    
T  47074985 cagag 47074989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 377 - 588
Target Start/End: Original strand, 47086723 - 47086931
Alignment:
Q  377 atcaacaccacacccttcatcgttggcctgagaaaagggtcatcttggatacaccaaagtgccactttaaccatattttccatgacattattatcaatga 476  Q
    ||||||| |||||||||||| ||||||||||||||||| ||   ||||| ||| ||||| | ||| |||||||||||||||||||||||||||||||| |    
T  47086723 atcaacaacacacccttcattgttggcctgagaaaaggttc---ttggacacatcaaagggtcaccttaaccatattttccatgacattattatcaataa 47086819  T
Q  477 cttcccaaggaacaagattattcacctctcccgcaacaaggcacttataagcccaaccagagagaataatctcctcaggttccaacacattaacatctag 576  Q
    |||||||||| ||||| ||||| | ||  || ||||||| | |  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47086820 cttcccaagggacaagcttatttagcttgcctgcaacaatgtaaatataagcccaaccagagagaagaatctcctcaggttccaacacattaacatctag 47086919  T
Q  577 gtttcttctgca 588  Q
    ||||||||||||    
T  47086920 gtttcttctgca 47086931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 47086556 - 47086596
Alignment:
Q  374 aacatcaacaccacacccttcatcgttggcctgagaaaagg 414  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  47086556 aacatcaacaacacacccttcattgttggcctgagaaaagg 47086596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University