View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_high_4 (Length: 510)
Name: NF2387_high_4
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 5e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 46001451 - 46001289
Alignment:
| Q |
95 |
ctaagttgggtagcaaatgagtttataaacatcaacaaacatacacatgtaacacatactaagggatctatataatattgcagcaactaaatcttagcaa |
194 |
Q |
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| T |
46001451 |
ctaagttggatagcaaatgagtttataaacatcaacaaacatacacatgtaacacatactaagggatctatataatattgcagcaactaaatcttagcaa |
46001352 |
T |
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| Q |
195 |
gtggttgggagttcaattctcaattagaattgggaggggagaactcactttatgtgtgtaact |
257 |
Q |
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| T |
46001351 |
gtggttgggagttcaattctctattagaattgggaggggagaactcactttatgtgtgtaact |
46001289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 46001923 - 46001828
Alignment:
| Q |
1 |
taaagtgtgagaaggaactttctcaaaacatgcaggttaatggtttctctcttgtaattttaatttaattcaaatgacaaattaattatatcctctaag |
99 |
Q |
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| T |
46001923 |
taaagtgtgagaaggaactttctcaaaacatg---gttaatggtttctctcttgtaattttaatttaattcaaatgacaaattaattatatcctctaag |
46001828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 436 - 492
Target Start/End: Complemental strand, 46000819 - 46000763
Alignment:
| Q |
436 |
atcatctttctgcacatccatttgaacttccttctgcatataataagtatttaactt |
492 |
Q |
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| T |
46000819 |
atcatctttctgcacatccatttgaacttccttctgcatataataagtatttaactt |
46000763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 52685080 - 52685159
Alignment:
| Q |
285 |
ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc |
364 |
Q |
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| T |
52685080 |
ggctgaaagagaaccatcggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc |
52685159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 36090481 - 36090560
Alignment:
| Q |
285 |
ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc |
364 |
Q |
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| T |
36090481 |
ggctgaaagagaaccatcagcaatcttaatttttaaattacttgcacaaggactatatgaagaaaacatactagactctc |
36090560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 3044848 - 3044778
Alignment:
| Q |
294 |
agaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc |
364 |
Q |
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| T |
3044848 |
agaaccatcggcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc |
3044778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 33717368 - 33717289
Alignment:
| Q |
285 |
ggctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctc |
364 |
Q |
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| T |
33717368 |
ggctgaaagagaaccatcagcaatcttaatttttaaattacctgcacaaggactatatgaagaaaacatactagactctc |
33717289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 18930668 - 18930590
Alignment:
| Q |
287 |
ctgaaaaagaatcatcggcaatcttaatttttaacttacatgcacaaggaatgtatgaagagaacccactagagtctct |
365 |
Q |
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| T |
18930668 |
ctgaaagagaaccatcagcaatcttaatttttaaattacctgcacaaggactataggaagaaaacatactagactctct |
18930590 |
T |
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