View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2387_high_6 (Length: 385)
Name: NF2387_high_6
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 5098262 - 5098618
Alignment:
| Q |
16 |
ataataataagaaaaatatagtgacacaagacaattctaagtaattatgtataaggcaattcaatagaaaataaaaaagtcaaatagtttcatgtgacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5098262 |
ataataataagaaaaatatagtgacacaagacaattctaagtaattatgtataaggcaattcaatagaaaataaaaaagtcaaatagtttcatgtaacaa |
5098361 |
T |
|
| Q |
116 |
ttttaaacattaaccttgtgactctgtttgggacaactgaaaaattgagagctagcagtgtcatcaagaggtgaaggttgttgacttgtatcatattctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5098362 |
ttttaaacattaaccttgtgactctgtttgggacaactgaaaaattgagagctagcagtgtcatcaagaggtgaaggttgttgacttgtatcatattctt |
5098461 |
T |
|
| Q |
216 |
tgacttttttcttcttttgggattctttggttgttgaagaaagacatgtataccaattctcacattggtattcattgtcataatgtggaggtccagatga |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5098462 |
tgacttttttcttcttttgggtttctttggttgttgaagaaagacatgtataccaattctcacattggtattcattgtcataatgtggaggtccagatga |
5098561 |
T |
|
| Q |
316 |
tgcatcagataccattgataaatcttcttcagattccaccttctcatccatgaccat |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5098562 |
tgcatcagataccattgataaatcttcttcagattcctccttctcatccatgaccat |
5098618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 47592082 - 47592036
Alignment:
| Q |
299 |
tgtggaggtccagatgatgcatcagataccattgataaatcttcttc |
345 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| |||||||||||||| |
|
|
| T |
47592082 |
tgtggaggtccagaagaagcatcagaaaccatggataaatcttcttc |
47592036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University