View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_high_7 (Length: 384)
Name: NF2387_high_7
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 19134504 - 19134855
Alignment:
| Q |
16 |
atcttacaccctcgactttaaatatcaaatctcccattcaaatttcaattttacaactacgaacannnnnnnncctagggttgaaccgtaaaacatacat |
115 |
Q |
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| T |
19134504 |
atctcacacccttgactttaaatatcaaatctcccattcaaatttcaattttacaactacacacattttttttcctagggttgaaccgtaaaacatacat |
19134603 |
T |
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| Q |
116 |
aaagtgtggagaagaaaaatgtctggttcaaacccacggcccattgtagcaaatgtctccacaactttttaccacatgagttgcacttacgaaacaaata |
215 |
Q |
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| T |
19134604 |
aaagtgtggagaagaaaaatgtctggttcaaacccacagcccattgtagcaaatgtctccacaactttttaccacatgagttgcacttgcgaaacaaata |
19134703 |
T |
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| Q |
216 |
ttcattttaaatagcaattttacgaaactatagttgcagagaaatacaaagagtaaggtttagaaactag-ttgttattaaaagatacgataatagtatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19134704 |
ttcattttaaatagcaattttacgaaactatagttgcagagaaatacaaagagtaaggtttagaaactagtttgttattaaaagatacgataatagtatt |
19134803 |
T |
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| Q |
315 |
atcatgaggtatggtagcaaatgctggttcttttccagttcacagtctgaag |
366 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19134804 |
atcatgaggtatggtcgcaaatgctggttcttttccagttcacagtctgaag |
19134855 |
T |
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